Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57240 340 / 6e-115 ORP4C OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) AT4G25850 330 / 3e-111 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT4G25860 319 / 8e-107 ORP4A OSBP(oxysterol binding protein)-related protein 4A (.1) AT3G09300 69 / 2e-12 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G59420 62 / 2e-10 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT5G02100 62 / 2e-10 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT2G31030 52 / 4e-07 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT2G31020 51 / 1e-06 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT1G13170 51 / 1e-06 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT4G08180 51 / 1e-06 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040586 [exp] 683 / 0 AT5G57240 367 / 3e-125 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Lus10024386 [exp] 65 / 4e-11 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 63 / 2e-10 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10025695 [exp] 59 / 3e-09 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 56 / 3e-08 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10028087 [exp] 55 / 7e-08 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10035967 [exp] 55 / 7e-08 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024613 [exp] 55 / 9e-08 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10036949 [exp] 49 / 6e-06 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G143600 [exp] 438 / 1e-153 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 430 / 3e-150 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2) Potri.006G086400 [exp] 68 / 4e-12 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.002G088000 [exp] 54 / 2e-07 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.001G121700 [exp] 52 / 3e-07 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.005G172900 [exp] 52 / 4e-07 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 49 / 3e-06 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.019G015111 [exp] 48 / 1e-05 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.003G111600 [exp] 45 / 7e-05 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein
Representative CDS sequence Show only first row Show all	>Lus10021603 pacid=23182100 polypeptide=Lus10021603 locus=Lus10021603.g ID=Lus10021603.BGIv1.0 annot-version=v1.0 ATGGCAAAGGAGGAAGCAGAAGGAGGGACGATGGAGGTGGTGCTTACAAAGCCTATGTCAGTGGATGCTGATCATGACTCCTCGGATTACCGCACTCCAA ACATCGTCCAACGCATCTTAACCCTCTTCAAAAACGTATGCCCTGGATCAGAACTCACCACCAATTTCCAGCTCCCCCCTTCATTCAACTACCCAAAGTC GCAGCTCCAGCTGTACGGCGAATCCGTCTACAGCACACGCAAAGACATCCTCGGCGAATGCAACAATGCCCTCGATCCGCTCGAGAGGTTTACCAAAGTA GTCGCTTGGAGCATTTCGACAACTCGCCCATCCATCTTCGGAGTTGCTCCATACAACCCGGTCCTAGGCGAGACCCACCACGTCTCCTCTCGTTCCTTAA ATCTACGACTTGAACAGGTGTCGCACCATCCTCCGATCACGGCACTCCACGCCACTGACCAAATCCATAACATCTCCATCGTCAGCTTCCATCGGCCCGT CCCGAGGTTCCTTGGTACTAAAGTTGAGGTTGAGGTGCAGGGGAAGAGGATACTTAAGCTTTTGAATCATGATGATGAAACTTACGTCATGAATTCACCT AGTCTCTTGATCAAGTTCTTACCCCCCTCTGTTGACTGGGTTGGAACTGTGGATATCAGCTGCCAAAAGACTGGATATGAAGCTGGCTTATCCTACGCTA CTTCTTCCCTACTAGGACGCACTGGTAATAATAACTCCATCAGTGGCAAAATCTACCACAAGCCAACTCCATCTTCTTCCCGAACCTTACTCTACACACT AAGTGGCCACTGGACCAGTAGTGTGAAAATAAAAGATCAAAATGGAGGTGGAGAACGAGTTATATACAATGCTAGAGAAGTTGCGTCAAAATTGAAAACC CCTGTTCTGAAAGATCCACAGAAGGTGTTAGGGAGCGAGTCGACATTGGTGTGGAGTGAGGTGAGCAGAGCAATAATGAGCCAAAACTGGGACAAGGCAA AGGAAGCGAAGAGAGCGGTAGAGGAAAAACAGAGGGAGATTGGTAAGGAAAGGAGATCAAGAGGAGAGATTTGGGTTCCTAAATATTTTACTGCCTCCTC CTCTTCCTCTAAAGATGAATATTTCCCTACTGATAAACTCGTTCCCCCAGCTCCCATTGTTGTTCCCTTCTAG
AA sequence Show only first row Show all	>Lus10021603 pacid=23182100 polypeptide=Lus10021603 locus=Lus10021603.g ID=Lus10021603.BGIv1.0 annot-version=v1.0 MAKEEAEGGTMEVVLTKPMSVDADHDSSDYRTPNIVQRILTLFKNVCPGSELTTNFQLPPSFNYPKSQLQLYGESVYSTRKDILGECNNALDPLERFTKV VAWSISTTRPSIFGVAPYNPVLGETHHVSSRSLNLRLEQVSHHPPITALHATDQIHNISIVSFHRPVPRFLGTKVEVEVQGKRILKLLNHDDETYVMNSP SLLIKFLPPSVDWVGTVDISCQKTGYEAGLSYATSSLLGRTGNNNSISGKIYHKPTPSSSRTLLYTLSGHWTSSVKIKDQNGGGERVIYNAREVASKLKT PVLKDPQKVLGSESTLVWSEVSRAIMSQNWDKAKEAKRAVEEKQREIGKERRSRGEIWVPKYFTASSSSSKDEYFPTDKLVPPAPIVVPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10021603 [exp]	0	1
AT5G03890			unknown protein		Lus10015117 [exp]	4.7	0.9399
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	11.6	0.9299
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	15.2	0.9301
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Lus10028273 [exp]	15.8	0.9225
AT4G10380		AtNIP5;1, NIP5;...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10010153 [exp]	19.8	0.9254
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	20.8	0.9283
AT1G09440			Protein kinase superfamily pro...		Lus10030863 [exp]	22.2	0.9185
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	23.9	0.9266
AT3G05640			Protein phosphatase 2C family ...		Lus10037709 [exp]	24.0	0.9158
AT1G61590			Protein kinase superfamily pro...		Lus10034757 [exp]	27.9	0.9259

Compare expression of checked genes

Lus10021603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.