Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07340 191 / 3e-61 PFD1 PREFOLDIN 1 (.1.2) AT1G65560 135 / 3e-37 Zinc-binding dehydrogenase family protein (.1) AT1G26320 117 / 2e-30 Zinc-binding dehydrogenase family protein (.1.2) AT5G16970 112 / 2e-28 AT-AER alkenal reductase (.1) AT5G16980 108 / 3e-28 Zinc-binding dehydrogenase family protein (.1.2) AT5G16990 110 / 8e-28 Zinc-binding dehydrogenase family protein (.1) AT5G37980 108 / 3e-27 Zinc-binding dehydrogenase family protein (.1) AT3G03080 107 / 8e-27 Zinc-binding dehydrogenase family protein (.1) AT5G16960 107 / 1e-26 Zinc-binding dehydrogenase family protein (.1) AT5G17000 107 / 1e-26 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040589 [exp] 308 / 8e-103 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 114 / 4e-29 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 110 / 1e-27 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 110 / 1e-27 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 110 / 1e-27 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 107 / 1e-26 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 106 / 3e-26 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 105 / 5e-26 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 103 / 3e-25 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079700 [exp] 207 / 9e-68 AT2G07340 203 / 6e-69 PREFOLDIN 1 (.1.2) Potri.018G149200 [exp] 197 / 1e-63 AT2G07340 193 / 7e-65 PREFOLDIN 1 (.1.2) Potri.010G177700 [exp] 149 / 1e-42 AT1G65560 514 / 0.0 Zinc-binding dehydrogenase family protein (.1) Potri.017G002300 [exp] 121 / 5e-32 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002950 [exp] 121 / 9e-32 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.017G003950 [exp] 116 / 9e-32 AT1G26320 237 / 2e-78 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 120 / 2e-31 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 119 / 4e-31 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.007G143800 [exp] 118 / 1e-30 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002500 [exp] 115 / 1e-29 AT3G03080 433 / 1e-152 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase CL0200 [flax] [poplar] Prefoldin PF01920 [flax] [poplar] Prefoldin_2 Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10021609 pacid=23182125 polypeptide=Lus10021609 locus=Lus10021609.g ID=Lus10021609.BGIv1.0 annot-version=v1.0 ATGCGTGGTCGAATGCACCCTCCTTCCTTTTCCTCTTACATCCCTTCTTTCCTCCCCGGCCATCTGGTTGAAGGTTTCGGTGTCTCAAAGGTAGTGGATT CGAACAACCCGGATTATAAGGCCGGCGAATTGATTGTCGGGATGACCGGTTGGGAAGAGTACAGCCTGATTCGGCACTTTCCGGAAGGGATCGACATCTA CTTTGCCAACGTGGGAGGCGAAATTCTGGACGCGGCACTCTTCAACATGAAGGCGAATGGTCGGATAGCAGTTTGCGGCATGGTTGCTCAGAACAGTGTT AGTGATCCGGGTGCTGGAATTCGCATCATCTTCAGCGTCGTCACCAAGCGCATCACGATGCAAGGCTTCCTGCAAAGTGATTTCTTGCATCTCTACCCGC GCTTCTTGGAGCATGTCACTGCACACTACCTAAAGGGGTACATTGTCTACGTGGAGGACATGGACGATGGGTTAGACAGAGCTCGAGCTGCCCTTGCTGG ACTATTCACGGGCCACAACGTCGGCAAGAAAGTGGCCTTTATGGAGATTCAAGGTCGCATGATCGAGACTACTGCAAAATTGAAACAGGTGCAGAACCAG ATGCGAACTAAAGAAGGGGAAAAGAAGCGTGCTTATTTAACCATGCTGGAGTTGCAGCAGCTACCTGATGATACAAATACATACAAGTCCATAGGGAGAA CGTTTGTCTTGGAACCTAAACCTGTCTTGATGACTGAGCAAGAGCATAAGCACAAGGACAGTGAAGCTGCAATAGCATCACTGCAGACCTCCAAGGAGTA TCTGGAGAAGCAGATTGTTGAGGTGGAGAACAACCTGAAGGAACTGTTACAGCAGGATCCTGGTCTGGCCCGGCAGATTATGTCTATGAGCGTCTAA
AA sequence Show only first row Show all	>Lus10021609 pacid=23182125 polypeptide=Lus10021609 locus=Lus10021609.g ID=Lus10021609.BGIv1.0 annot-version=v1.0 MRGRMHPPSFSSYIPSFLPGHLVEGFGVSKVVDSNNPDYKAGELIVGMTGWEEYSLIRHFPEGIDIYFANVGGEILDAALFNMKANGRIAVCGMVAQNSV SDPGAGIRIIFSVVTKRITMQGFLQSDFLHLYPRFLEHVTAHYLKGYIVYVEDMDDGLDRARAALAGLFTGHNVGKKVAFMEIQGRMIETTAKLKQVQNQ MRTKEGEKKRAYLTMLELQQLPDDTNTYKSIGRTFVLEPKPVLMTEQEHKHKDSEAAIASLQTSKEYLEKQIVEVENNLKELLQQDPGLARQIMSMSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07340		PFD1	PREFOLDIN 1 (.1.2)		Lus10021609 [exp]	0	1
AT1G12650			unknown protein		Lus10024493 [exp]	2.6	0.8167
AT3G50860			Clathrin adaptor complex small...		Lus10041742 [exp]	10.2	0.7523
AT4G30900			DNAse I-like superfamily prote...		Lus10022154 [exp]	11.0	0.7858
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	12.4	0.7440
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10039600 [exp]	14.1	0.7615
AT3G49100			Signal recognition particle, S...		Lus10024862 [exp]	18.4	0.7754
AT5G02280			SNARE-like superfamily protein...		Lus10024390 [exp]	20.1	0.7541
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	28.4	0.7777
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	28.5	0.7649
AT5G40080			Mitochondrial ribosomal protei...		Lus10034241 [exp]	31.1	0.6920

Compare expression of checked genes

Lus10021609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.