Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05560 364 / 7e-122 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT4G15550 346 / 7e-115 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05530 325 / 5e-107 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT4G14090 320 / 5e-105 UDP-Glycosyltransferase superfamily protein (.1) AT2G31790 250 / 8e-78 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 246 / 2e-76 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05675 237 / 5e-73 UDP-Glycosyltransferase superfamily protein (.1) AT1G05680 232 / 8e-71 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G43840 223 / 1e-67 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G24100 223 / 1e-67 UGT74B1 UDP-glucosyl transferase 74B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015515 [exp] 588 / 0 AT4G15550 379 / 3e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10019989 [exp] 583 / 0 AT4G15550 379 / 5e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10040591 [exp] 311 / 4e-105 AT4G14090 185 / 1e-56 UDP-Glycosyltransferase superfamily protein (.1) Lus10009412 [exp] 261 / 4e-82 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10008742 [exp] 258 / 1e-80 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020556 [exp] 255 / 1e-79 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 246 / 4e-76 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10006353 [exp] 245 / 1e-75 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 238 / 8e-73 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G236400 [exp] 440 / 1e-151 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.002G236500 [exp] 430 / 8e-148 AT4G15550 436 / 3e-150 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.014G146000 [exp] 425 / 8e-146 AT4G15550 429 / 2e-147 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.006G055600 [exp] 395 / 4e-134 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.016G052500 [exp] 387 / 5e-131 AT4G15550 419 / 3e-143 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.004G083700 [exp] 308 / 2e-99 AT4G14090 374 / 3e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G101800 [exp] 297 / 6e-96 AT4G14090 369 / 3e-124 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 277 / 2e-88 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.007G140500 [exp] 265 / 2e-83 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.009G095500 [exp] 257 / 3e-80 AT2G23260 421 / 2e-144 UDP-glucosyl transferase 84B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10021610 pacid=23182133 polypeptide=Lus10021610 locus=Lus10021610.g ID=Lus10021610.BGIv1.0 annot-version=v1.0 ATGGCAACATTCCCAGCACAAGGCCATGTCAACCCCAGCGTTCATTTCTCCATCCAGTTAGTAGCCCTCGGATGCCGTGTCATTCTCGTCACCACCGTAT CCGGGAGCTACCTTATTACCAAGTCCAACAACATCCTCCCGCCTGGACTGTCCATTGTAACATTCTCCGACGGTTACGACATGGCGGGGTCGTCTTGGAA GTCCAAGGAAGACCAAAACAAACAGTGGGAGCAGTTGAATAGCCGCGGCTCCCAGTTTCTTAGCGACTTAATCGTCACCAACGCCAACCAGGGAACGCCC TTTGCTTGCTTGGTCTACAGCCCCCTGCTAACTTGGGCTGTGGATGTGGCGCGTGATCACAACCTCCCGACGACACTTCTCTGGATTCAACCCGCTACTG TTATGGACATCTATTACTATCTCTTCAACGGCTACGGCGATCTTTTCGAAAAATGCAAAGATCCCTCTTTTGCTATGGACTTGCCGGGGCTTCATTCAGT AAGCTTCACTTCTAAAGACCTTCCTTCTTTTGCTATTCATCCCAACCAATATCCACTACTTATCAACGGTGTCAAACAACAAATGCAAGTGTTGACCAGA GATGGCACCAAGTCTAAGGTATTGGTCAACACGTTTGATGAGTTAGAGATGGAAGCCATGAAAGCAAATGTGGAACTCGAGATGATTGGAGTTGGTCCCC TGATTCCATCGTGTTTCTGGGAGCCGCGTCACGATAACAACAACACTGACGGTGGTGATAGTGTAGTGACGTGGCTGGATTTGCAAGCCAGGTCATCGGT TGTTTACGTATCGTTCGGAACAATGGCCGTAATATCGAAGAAGCAAAGGGAAGAGTTGGCAAAAGGGTTAGTGAGTAGTAGTAATAGACCATTCTTGTGG GTGATAAGAAAAGATGAAGCAGTGGAGAAAGAAGAAGAGAGGATTGAGATGATGCGATGGAGAGAGGAGATGGAGACCAAGGCAGAGAGTGTTGGTGGAA GAATAATTGAATGGTGCTCGCAGGTGGAGGTGCTTTCACATGAAGCAGTAGGGTGTTTTGTGACGCACTGTGGATGGAACTCGACGCTAGAGAGCATATG TTTGGGAGTACCACTGGTGGCTTTCCCTCAATTTTCGGATCAGACCACGAATGCTAAGCTGGTAGAGGATGTTTGGAAGATAGGGGTGAGGGTGGTGGTG CCCAATCAGAAACCTGAAACAGAGGAGGAGGAGGCGGCGGTGGTGGTGGAGGGTGATGAGATAAGGAGATGTTTGGATTTGGTGATGGGAGAAGGTCAAG TTAGGGAACAAGTTACGACAAATGCAGATAAGTGGAAGCAACTTGCTAGAGATGCGCTGCGGGAAGGTGGATCTTCGCATTCCAATATCAAGGCTTTTGT CGACCAAATTATCGGTAAATAA
AA sequence Show only first row Show all	>Lus10021610 pacid=23182133 polypeptide=Lus10021610 locus=Lus10021610.g ID=Lus10021610.BGIv1.0 annot-version=v1.0 MATFPAQGHVNPSVHFSIQLVALGCRVILVTTVSGSYLITKSNNILPPGLSIVTFSDGYDMAGSSWKSKEDQNKQWEQLNSRGSQFLSDLIVTNANQGTP FACLVYSPLLTWAVDVARDHNLPTTLLWIQPATVMDIYYYLFNGYGDLFEKCKDPSFAMDLPGLHSVSFTSKDLPSFAIHPNQYPLLINGVKQQMQVLTR DGTKSKVLVNTFDELEMEAMKANVELEMIGVGPLIPSCFWEPRHDNNNTDGGDSVVTWLDLQARSSVVYVSFGTMAVISKKQREELAKGLVSSSNRPFLW VIRKDEAVEKEEERIEMMRWREEMETKAESVGGRIIEWCSQVEVLSHEAVGCFVTHCGWNSTLESICLGVPLVAFPQFSDQTTNAKLVEDVWKIGVRVVV PNQKPETEEEEAAVVVEGDEIRRCLDLVMGEGQVREQVTTNADKWKQLARDALREGGSSHSNIKAFVDQIIGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	0	1
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	2.6	0.9414
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019992 [exp]	3.2	0.9335
AT5G44440			FAD-binding Berberine family p...		Lus10039682 [exp]	3.5	0.9191
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	7.9	0.9286
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10008958 [exp]	11.4	0.9224
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000089 [exp]	11.7	0.8915
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	13.4	0.9273
AT2G43320			S-adenosyl-L-methionine-depend...		Lus10015953 [exp]	13.7	0.9250
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10029370 [exp]	15.0	0.8971
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	16.7	0.9238

Compare expression of checked genes

Lus10021610 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.