Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76540 531 / 0 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT1G20930 523 / 0 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT2G38620 408 / 4e-144 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT3G54180 407 / 9e-144 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT3G48750 337 / 3e-116 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G67580 251 / 2e-77 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G73690 239 / 1e-76 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G18040 237 / 1e-75 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1) AT1G66750 233 / 1e-74 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT5G63370 235 / 6e-74 CDKG;1 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040593 [exp] 644 / 0 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10003236 [exp] 377 / 7e-131 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 370 / 3e-128 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10038755 [exp] 293 / 2e-99 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10038754 [exp] 253 / 3e-83 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10015816 [exp] 249 / 2e-76 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 248 / 4e-76 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036106 [exp] 237 / 2e-74 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 236 / 7e-74 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003400 [exp] 550 / 0 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.005G257500 [exp] 548 / 0 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.016G142800 [exp] 414 / 2e-146 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.006G113200 [exp] 399 / 2e-140 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.004G133500 [exp] 348 / 7e-121 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.010G056900 [exp] 255 / 7e-79 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G178200 [exp] 249 / 4e-77 AT1G67580 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G079100 [exp] 239 / 3e-76 AT1G73690 573 / 0.0 cyclin-dependent kinase D1;1 (.1) Potri.012G052100 [exp] 238 / 8e-76 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1) Potri.008G008400 [exp] 234 / 1e-75 AT3G48750 293 / 3e-99 cell division control 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021611 pacid=23182118 polypeptide=Lus10021611 locus=Lus10021611.g ID=Lus10021611.BGIv1.0 annot-version=v1.0 ATGGAGAATCCAGCTACCACAGCGTCGGTGATGGAGTTGTTCCAGAAGTTGGAGAAGGTAGGCGAAGGAACCTACGGCAAAGTCTACAGAGCAAGAGAGA GAGCCACTGGGAAGATCGTGGCTCTGAAGAAGACTCGACTACACGAGGATGACGAAGGAGTCCCTGCCACTACTCTTCGCGAGGTCTCCATCTTGCGAAT GCTCTCCAGGGATCCTCATGTTGTTAGATTGATGGACGTTAAACAAGGGCAGAATAAAGAAGGGAAGACAGTTCTCTACCTTGTGTTTGAGTATATGGAT ACTGACGTGAAGAAGTACATTCGTAGCTTTCGCCAAACAAGGGAGACTATCCCTGTGAACATTGTTAAGAGTTTGATGTACCAATTGTGCAAAGGTGTTG CATTCTGTCACGGGCATGGAATCGTTCACAGGGACCTAAAGCCCCACAATCTCTTGATGGACAGGAAGACAATGATTCTGAAGATTGCAGATCTTGGTCT GGCTCGTGCATTTACTCTCCCAATTAAGAAGTATACGCACGAGATCTTGACTCTTTGGTATAGAGCTCCTGAAGTTCTCTTAGGAGATACCCATTACTCG ATTGCAGTGGACATATGGTCCGTTGGCTGTATATTTGCTGAATTAGTGAATCTGCAAGCCATATTCCAAGGTGATTCAGAGCTGCAGCAGCTTCTGCATA TTTTCAGACTGCTGGGCACACCGAATGAAAGGGAGTGGCCTGGAGTTAGTAGTCTGGTGAATTGGCACGAATATCCCCAATGGAGTCCAAAATGTTTGTC AACTGCTGTCCCTACCCTGGACAAGGATGGGCTGGATCTGCTAGCGCAAATGTTGAAGTATGATCCGTTAAAGCGTATAACAGCGAAGAACGCCATGGAA CACCCTTACTTCAACGATCTCATGAAGGAGGGTCTGTGA
AA sequence Show only first row Show all	>Lus10021611 pacid=23182118 polypeptide=Lus10021611 locus=Lus10021611.g ID=Lus10021611.BGIv1.0 annot-version=v1.0 MENPATTASVMELFQKLEKVGEGTYGKVYRARERATGKIVALKKTRLHEDDEGVPATTLREVSILRMLSRDPHVVRLMDVKQGQNKEGKTVLYLVFEYMD TDVKKYIRSFRQTRETIPVNIVKSLMYQLCKGVAFCHGHGIVHRDLKPHNLLMDRKTMILKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGDTHYS IAVDIWSVGCIFAELVNLQAIFQGDSELQQLLHIFRLLGTPNEREWPGVSSLVNWHEYPQWSPKCLSTAVPTLDKDGLDLLAQMLKYDPLKRITAKNAME HPYFNDLMKEGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	0	1
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Lus10028544 [exp]	1.0	0.9638
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	1.4	0.9628
AT5G56120			unknown protein		Lus10008355 [exp]	3.5	0.9538
AT5G56120			unknown protein		Lus10027112 [exp]	4.2	0.9489
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	6.0	0.9554
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	6.3	0.9535
AT5G23420		HMGB6	high-mobility group box 6 (.1....		Lus10013453 [exp]	7.7	0.9453
AT5G12360			unknown protein		Lus10038810 [exp]	7.9	0.9523
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	12.0	0.9533
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	13.0	0.9505

Compare expression of checked genes

Lus10021611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.