Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43270 166 / 5e-47 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT1G27370 152 / 5e-42 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G27360 141 / 6e-38 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT2G42200 129 / 1e-33 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 126 / 1e-32 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT1G02065 121 / 4e-31 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT1G69170 122 / 8e-31 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G33810 110 / 6e-29 SBP SPL3 squamosa promoter binding protein-like 3 (.1) AT5G50670 114 / 2e-28 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 114 / 2e-28 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040595 [exp] 599 / 0 AT5G43270 135 / 9e-36 squamosa promoter binding protein-like 2 (.1.2.3) Lus10011356 [exp] 162 / 1e-45 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10006411 [exp] 157 / 7e-44 AT5G43270 204 / 1e-61 squamosa promoter binding protein-like 2 (.1.2.3) Lus10021034 [exp] 127 / 6e-33 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10000643 [exp] 128 / 5e-32 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10016275 [exp] 123 / 8e-32 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10036812 [exp] 125 / 2e-31 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10023818 [exp] 122 / 3e-31 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10021141 [exp] 124 / 9e-31 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G149900 [exp] 278 / 4e-89 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.003G172600 [exp] 180 / 2e-51 AT5G43270 237 / 3e-73 squamosa promoter binding protein-like 2 (.1.2.3) Potri.001G055900 [exp] 167 / 5e-47 AT5G43270 233 / 3e-72 squamosa promoter binding protein-like 2 (.1.2.3) Potri.014G057800 [exp] 131 / 6e-34 AT1G27370 137 / 3e-36 squamosa promoter binding protein-like 10 (.1.2.3.4) Potri.002G142200 [exp] 129 / 7e-34 AT1G02065 243 / 8e-79 squamosa promoter binding protein-like 8 (.1.2) Potri.002G142400 [exp] 128 / 6e-33 AT1G27360 141 / 5e-38 squamosa promoter-like 11 (.1.2.3.4) Potri.008G097900 [exp] 129 / 9e-33 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.001G058600 [exp] 126 / 2e-32 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.014G057700 [exp] 125 / 2e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2) Potri.015G098900 [exp] 124 / 9e-32 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10021614 pacid=23182114 polypeptide=Lus10021614 locus=Lus10021614.g ID=Lus10021614.BGIv1.0 annot-version=v1.0 ATGAGTCATAGTGGAAGAGCAGCAATTGATTCTCCTTCTTTAACTAGTTGTGTTGCTATGGACTGGAACTTGAAGTCTGCATCTGAGTGGGACTGGGATA CCTTATATGGGTTTAGCTCTAGGACATGTGGCACTCAGAAACAACAAGTAAATCACTTAAACCCTGATGCTGAAGGTGAAGGAGTTGGAAGAATCGACAG TGGATTCATCTACTCAGACGGGTGTGGTGGTGGTTTTTCAGGCTCCGATTCTGGGTATGGATCTTCATCTAAGAGCTCTGTCTCAGCCTCTGTTGGTTCG CCGTCAAAGGAGGGATTGCAGACACGAAATGCTGTGGAAGGACTTTCCAATGTTAACAAGGTTTCATCTGGGGAACATGTAATTGGTCTGAAGCTTGGTA AAAGGACATATTTTGGAGATGTATGCACAACCAAGTCTGTTGTAGCAGCTAAGAGACCTAGGAGCTCATGTCAAAGTGCACAGTCTCCTTGCTGTCAAGT TGAAGGATGCAACCTTGACCTCAAGTCAGCTAAAGATTACCATAGGAGGCATAGAATCTGTGAAAGCCATTCAAAAAGTCCCAAAGTCGTTGTTTCTGGC TTGGAACGCCGGTTTTGCCAGCAGTGCAGTAGGTTTCATCAGTTGTCAGAATTTGATGACAAGAAGCGAAGCTGTCGTAGGCGGCTCTCTGATCACAATG CACGTCGTCGTAGGCCACAGCCCGATGCAATACAATTCAATAACAGGCGGCAGATGAATAGGGTAGCATTACGGGCTAAAAGCTTCACTTGGCCAAGCGG ATGCGGCTTTGATTCTTTACCTAAAATTGTGAAATCAGAAGGCATGAGTAGGCAGATGAGCAATTTGTCTATTAATGATGTGCATGAAGAGATGATCTCA GACAAGGGCTTGTCTTTCAAAAGCAGTACACCTCAGATCTTTAGTGAAGGCTTAGAGTGCTCTCCTTCAACTTGTAACCTGGAGATGAACCCTAATTTTG GGGGTGCTCTCTCTCTTCTGTCAACCACTTCATCATGGGGTTTGAATGAGCCTACAGCTCTGGAGCAGCTGATGCTAGTCAATGACACAGGTATGGCCCA TCAGACAATGATTCATGCAGCAGAACCTCAAAGCTGGTCACTCTCGCCATCAGCAGCAAATGCATTTGATGGAAATATCACTAGTCTCCAGCAGTTTCAT CAATGTAAAACGCCATATCAGCTTGGCTCCTTCTACTCCAATCAAACGGACTAA
AA sequence Show only first row Show all	>Lus10021614 pacid=23182114 polypeptide=Lus10021614 locus=Lus10021614.g ID=Lus10021614.BGIv1.0 annot-version=v1.0 MSHSGRAAIDSPSLTSCVAMDWNLKSASEWDWDTLYGFSSRTCGTQKQQVNHLNPDAEGEGVGRIDSGFIYSDGCGGGFSGSDSGYGSSSKSSVSASVGS PSKEGLQTRNAVEGLSNVNKVSSGEHVIGLKLGKRTYFGDVCTTKSVVAAKRPRSSCQSAQSPCCQVEGCNLDLKSAKDYHRRHRICESHSKSPKVVVSG LERRFCQQCSRFHQLSEFDDKKRSCRRRLSDHNARRRRPQPDAIQFNNRRQMNRVALRAKSFTWPSGCGFDSLPKIVKSEGMSRQMSNLSINDVHEEMIS DKGLSFKSSTPQIFSEGLECSPSTCNLEMNPNFGGALSLLSTTSSWGLNEPTALEQLMLVNDTGMAHQTMIHAAEPQSWSLSPSAANAFDGNITSLQQFH QCKTPYQLGSFYSNQTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10021614 [exp]	0	1
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10041762 [exp]	2.0	0.9172
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	3.2	0.9061
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Lus10002414 [exp]	3.5	0.9089
AT5G54980			Uncharacterised protein family...		Lus10034604 [exp]	5.2	0.8793
AT1G54730			Major facilitator superfamily ...		Lus10033815 [exp]	5.7	0.9165
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10040252 [exp]	7.7	0.9022
AT1G09310			Protein of unknown function, D...		Lus10010904 [exp]	11.2	0.8999
AT5G56850			unknown protein		Lus10032679 [exp]	11.3	0.8934
AT1G09310			Protein of unknown function, D...		Lus10031428 [exp]	11.4	0.9113
AT5G47180			Plant VAMP (vesicle-associated...		Lus10011004 [exp]	12.4	0.8779

Compare expression of checked genes

Lus10021614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.