Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021617 pacid=23182113 polypeptide=Lus10021617 locus=Lus10021617.g ID=Lus10021617.BGIv1.0 annot-version=v1.0 ATGCTAGCTTCCAGGGAGTTAGGCGGAGTGAGGGAATCAAGGGTGAGGGATCGGTGGCTGGAAGCAGCGGTGATCGAGGAGATCTCGTTGTGGGGAATCG AGGTTGAGGGATCGGTGGCTGGAAGCAGCGCTGATCGAGGCACCCGGATGGAGATTAGATATAGAGGGGGAGGCGATGGTTTTTGTAGGCGTTTTGGTGG AAGGTGGCCACAATCAGCGGATATCCGGCGTTTTGGACGTGGAGCAGCGACGAAAGGTGTCCAGGCGGCGGCGACAACAAGAAAGGGAGAAGCCCACCAG CGATTTTTGGGTTGCATGATTCTAGGCGATTGCTCTGGGAAAATTGATGACCTTTCTAGTATTCCTTCCTCCACGATCAGTGTTGCCAATATTGATCCTC CTCTTGGGGGTAAGGAAGGTAGTGATACTCCTCGTAGGGGTAAGGAAGGCATTGAGAACCGGGAACATCAGTCTAAGGATGGTCATGCTCCTCGTGCGAA GACCCCAAAGGACCACAAACGCTCTCTTCCGACTAGTGATCTATCAGTGTGTTCCTCGAGGGATGACAAACCTTGTGGTATTAATATCCCGGAACCAAAT GCCCTCATTGGATGTCTCTAA
AA sequence Show only first row Show all	>Lus10021617 pacid=23182113 polypeptide=Lus10021617 locus=Lus10021617.g ID=Lus10021617.BGIv1.0 annot-version=v1.0 MLASRELGGVRESRVRDRWLEAAVIEEISLWGIEVEGSVAGSSADRGTRMEIRYRGGGDGFCRRFGGRWPQSADIRRFGRGAATKGVQAAATTRKGEAHQ RFLGCMILGDCSGKIDDLSSIPSSTISVANIDPPLGGKEGSDTPRRGKEGIENREHQSKDGHAPRAKTPKDHKRSLPTSDLSVCSSRDDKPCGINIPEPN ALIGCL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021617 [exp]	0	1
AT4G24900			unknown protein		Lus10024906 [exp]	5.3	0.6297
					Lus10011712 [exp]	7.4	0.6592
AT3G55150		ATEXO70H1	exocyst subunit exo70 family p...		Lus10040331 [exp]	13.0	0.5952
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Lus10009330 [exp]	16.6	0.5817
AT5G60770		ATNRT2.4	ARABIDOPSIS THALIANA NITRATE T...		Lus10016119 [exp]	18.1	0.6092
AT3G43660			Vacuolar iron transporter (VIT...		Lus10029776 [exp]	21.7	0.5852
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	30.2	0.5778
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	30.9	0.5752
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10004822 [exp]	33.2	0.6079
AT5G55930		ATOPT1	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10004237 [exp]	53.4	0.5388

Compare expression of checked genes

Lus10021617 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.