Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G074150 [exp] 108 / 5e-32 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021618 pacid=23182127 polypeptide=Lus10021618 locus=Lus10021618.g ID=Lus10021618.BGIv1.0 annot-version=v1.0 ATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTTCCCTTAACCAAGCCAC TGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCGAACAGGCACGCGGTCAGAGCCCCTGGCTCCTTCCACTGCTTGGGAGCTTA CGGTTTCATGTTCTATTTCACTCCCCGACGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAA GGGGGTCCTTGCTGA
AA sequence Show only first row Show all	>Lus10021618 pacid=23182127 polypeptide=Lus10021618 locus=Lus10021618.g ID=Lus10021618.BGIv1.0 annot-version=v1.0 MDRSPRFGSISSDNCPMKTRFRYGSGGFPLTKPLPMSRRLILQQARGQSPNRHAVRAPGSFHCLGAYGFMFYFTPRRGFFSPFPHGTTSLSVTQEYLALQ GGPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021618 [exp]	0	1
AT4G14740			Plant protein of unknown funct...		Lus10002798 [exp]	4.8	0.8931
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029570 [exp]	6.0	0.8863
AT4G25180			RNA polymerase III RPC4 (.1)		Lus10000362 [exp]	8.0	0.8347
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10042095 [exp]	14.0	0.8609
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	14.3	0.8796
AT2G02850		ARPN	plantacyanin (.1)		Lus10028641 [exp]	15.3	0.8188
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	17.5	0.8420
AT1G71460			Pentatricopeptide repeat (PPR-...		Lus10006174 [exp]	18.9	0.7432
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	19.7	0.8678
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	20.0	0.8589

Compare expression of checked genes

Lus10021618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.