Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 133 / 1e-38 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT5G61130 121 / 8e-34 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT5G08000 115 / 1e-31 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT4G13600 109 / 7e-29 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G03505 98 / 3e-25 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 99 / 7e-25 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT2G43870 98 / 2e-23 Pectin lyase-like superfamily protein (.1) AT3G59850 98 / 2e-23 Pectin lyase-like superfamily protein (.1) AT1G79480 97 / 4e-23 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G26450 91 / 4e-22 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034690 [exp] 235 / 2e-77 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10040522 [exp] 172 / 4e-53 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10021157 [exp] 171 / 5e-53 AT1G18650 157 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10002124 [exp] 123 / 8e-33 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10026662 [exp] 119 / 2e-32 AT1G18650 145 / 2e-43 plasmodesmata callose-binding protein 3 (.1) Lus10004650 [exp] 117 / 7e-32 AT1G18650 141 / 4e-42 plasmodesmata callose-binding protein 3 (.1) Lus10011418 [exp] 119 / 3e-31 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10037071 [exp] 114 / 5e-31 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 114 / 1e-30 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065750 [exp] 153 / 5e-46 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.015G057800 [exp] 152 / 1e-45 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.008G095300 [exp] 118 / 7e-33 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 117 / 3e-32 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.010G158900 [exp] 117 / 4e-32 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.001G315700 [exp] 116 / 1e-31 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.017G005800 [exp] 107 / 5e-27 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 107 / 6e-27 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 108 / 7e-27 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 106 / 2e-26 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28 CL0268 [flax] [poplar] PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10021619 pacid=23180265 polypeptide=Lus10021619 locus=Lus10021619.g ID=Lus10021619.BGIv1.0 annot-version=v1.0 ATGTTCCACATAGTGATAAACTACTGCACCAATTTGAAATTGGAAGGAGTTAAAGTGTCTGTACCTGGAAAATCGCCCAACACAGACAGAATCCATGTCC AGATGTCGACCGGAGTAAGCATCGTCGACACCAAAATCGGCACCGGCGACCATTACGTCTTTGTCGGCCCCGGCGCAGCCAATTTGTGTATCGAGAATGT ATCATGTGGGTCGGGACATGACATCAGGCTCACACCCCCACTACTATTTCCTCTTTCTATGCCCCATTTACTGAATCCCAAATCCCATCTCTTTCCCAAC TCCTCTCCTCAACTTCCTTTAAATCCACGCCCCATTATTGCTTGCTGCCATCCGAAAATGGCCCTCTTACTCCTCATTGGAATGCTAATGTTAGCCATGG CAGGAAACGCCTCGTGTACATGGTGCGTGTGCAAGGACATGCCAGATGCGGTGCTACAGAAGGCTCTGGACTATGCTTGTGGAGCTGGAGCTGACTGCAA CCCGACCCGCCAAAACGGGCAGTGTTTCCTACCTAACACAGTGAGAGCTCACTGCTCTTACGCTGTCAATAGCTATTACCAGAAGAAAGGCCAATCTCAG GGCTCTTGTGATTTCTCTGGCGCTGCTACCATCTCCACCTCTGACCCCAGTGTTACCGGCTGCTCTTACCCTGCTACTGCCAGGTATTATTTTCTCTTCT CCAACCTTTCTAACTCGAGAGAGAGAGAGAAATTGTTGATATTGAAACTTAGTTCACGATACATGTTCTAA
AA sequence Show only first row Show all	>Lus10021619 pacid=23180265 polypeptide=Lus10021619 locus=Lus10021619.g ID=Lus10021619.BGIv1.0 annot-version=v1.0 MFHIVINYCTNLKLEGVKVSVPGKSPNTDRIHVQMSTGVSIVDTKIGTGDHYVFVGPGAANLCIENVSCGSGHDIRLTPPLLFPLSMPHLLNPKSHLFPN SSPQLPLNPRPIIACCHPKMALLLLIGMLMLAMAGNASCTWCVCKDMPDAVLQKALDYACGAGADCNPTRQNGQCFLPNTVRAHCSYAVNSYYQKKGQSQ GSCDFSGAATISTSDPSVTGCSYPATARYYFLFSNLSNSREREKLLILKLSSRYMF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021619 [exp]	0	1
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10034690 [exp]	1.0	0.9663
AT5G15080			Protein kinase superfamily pro...		Lus10030796 [exp]	1.7	0.9103
AT2G20410			RNA-binding ASCH domain protei...		Lus10042558 [exp]	5.6	0.8579
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026921 [exp]	6.0	0.8948
AT1G23220			Dynein light chain type 1 fami...		Lus10021793 [exp]	6.3	0.9161
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	8.9	0.9070
AT4G39260		ATGRP8, CCR1, G...	glycine-rich RNA-binding prote...		Lus10001242 [exp]	9.9	0.8776
AT1G21090			Cupredoxin superfamily protein...		Lus10028576 [exp]	10.2	0.8699
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	10.7	0.8667
AT4G10810			unknown protein		Lus10010114 [exp]	10.8	0.8738

Compare expression of checked genes

Lus10021619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.