Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 605 / 0 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G06900 320 / 2e-103 CYP93D1 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) AT2G45560 312 / 1e-100 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT4G36220 311 / 4e-100 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1) AT2G45550 307 / 2e-98 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G01280 300 / 6e-96 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT1G33720 300 / 1e-95 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT4G12320 300 / 2e-95 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 299 / 3e-95 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT2G45570 298 / 4e-95 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021158 [exp] 685 / 0 AT5G07990 706 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 374 / 3e-124 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10040525 [exp] 362 / 2e-123 AT5G07990 362 / 2e-123 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 360 / 6e-119 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 353 / 2e-116 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 352 / 1e-115 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10021136 [exp] 322 / 5e-104 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10019457 [exp] 319 / 4e-103 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10022303 [exp] 319 / 5e-103 AT4G36220 680 / 0.0 ferulic acid 5-hydroxylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073300 [exp] 612 / 0 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G069100 [exp] 463 / 2e-159 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G274600 [exp] 440 / 2e-150 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 386 / 2e-129 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 380 / 1e-126 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 369 / 8e-123 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 366 / 2e-121 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 358 / 1e-118 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 356 / 1e-117 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 353 / 3e-116 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021620 pacid=23180343 polypeptide=Lus10021620 locus=Lus10021620.g ID=Lus10021620.BGIv1.0 annot-version=v1.0 ATGTCTACGTCGACGGCCATCATGTGCGACGGCATTATCATCGCCACCGCCATCTACCTCCTTCTCAGCCTCATCCACCTCCTCCGCCAACGTGGCAGAA AGCCTCTCCTACCGGGCCCCACTCCGTGGCCGATTGTGGGGAACCTTCTCCACTTGGGTCCAATGCCCCACCACACTATAGCCGCCCTGGCTAGGAGGTA CGGACCCCTAATATACCTCAGGCTAGGGTACGTGGACGTGGTGGTGGCCGCCTCGGCCTCGGTGGCTGCTCAGTTTTTGAAGCACAACGACTCCAACTTC TCCAATCGGCCTCAAACTTCTGGTGGGAAGTACATGGCTTACGGCTTCCAGGACATGGTGTTCGCCCCCTACGGCCCACGTTGGAAGCTTCTCCGGAAAG TCAGCGCCGTCCATCTCTTCTCCGGCAAGGCCTTGGATAATTTTAGACACGTCCGACAGAGAGAAGTGACGAGTCTGACTCGGGCGCTAGCGGGTTCTGG CGGCGCGACAGTGGACCTGGGCTTACTCATAACTTTCTGCTCCACAAACGCGTTGGGGAAAGCGTTAGTTGGGCGTGTAGGTGGGAAACAATGTGGGGGG GACACCCCCGGCGGTGTCGACCCTAGGGCGGAAAAGTTCAAGACCATGGTGGTGGAGCTTATGACCTTGGCCGGAATTTTCAACATCGGCGACTTCATCC CGGCCGTGGAATGGCTAGACTTACAGGGCATTGCTGCTAGGATGAAGAGTGTCCACAACAGGTTCGACTCCTTCTTGAATCAAATACTTGTGGAATACAG GAAGACCGCCCGCGAGGGAGAAAACGTGGACTTTTTGAGTTCGTTGATGTCGTCAAGAATTGCGGACGGCCCCGATGGAGTGGAGCGTCAGATCACTGAC ACTGAAATCAAAGCTTTGCTTCTCAATATGTTCAGTGCCGGAACCGACACGTCATCAAGTACGGTGGAATGGGCCGTGGCGGAGCTAATCCGTCACCCGA AAGTCCTGACCCAACTCCAAACCGAGCTGGACACCGTAGCGGGCCGAGACCGTCTGGTCAACGAACTTGACATCCCTAACCTCCCATACTTAAACGCCGT CGTAAAGGAGATCTTCCGTTTACATCCACCAACTCCTCTTTCTCTCCCCCGGATGGCCGCCGAAAGCTGCGAGATCAACGGCCTCCATATCCCGAAAGGT GCAACACTCTTGGTCAACATATGGGCCATAGGCCGCGATCCGGATGTGTGGTCTGACCCGTTGAGGTTCGACCCGGGCAGGTTCTTGCCCGGTGGGGAGA AGCCCGGAGTGGGTGTGAAGGGGAGCGACTTCGAGCTGATTCCATTCGGGGCGGGTAGGAGGATCTGCTCGGGTATGAGCTTGGGGCTCCGGACGGTTCA GCTGATGACGGCTGTTCTTGCCCATGGGTTTGATTGGGAGCTTAAAGACGGAGTCTCGGCGGAGGAGCTGAATATGGATGAGGTTTTCGGGATTTCGTTA CAACGGGCTGTGCCGCTGGTCGTGCGGCCAAAAGCACGATTGGCGGAGCATGTTTATCGAGGGTGA
AA sequence Show only first row Show all	>Lus10021620 pacid=23180343 polypeptide=Lus10021620 locus=Lus10021620.g ID=Lus10021620.BGIv1.0 annot-version=v1.0 MSTSTAIMCDGIIIATAIYLLLSLIHLLRQRGRKPLLPGPTPWPIVGNLLHLGPMPHHTIAALARRYGPLIYLRLGYVDVVVAASASVAAQFLKHNDSNF SNRPQTSGGKYMAYGFQDMVFAPYGPRWKLLRKVSAVHLFSGKALDNFRHVRQREVTSLTRALAGSGGATVDLGLLITFCSTNALGKALVGRVGGKQCGG DTPGGVDPRAEKFKTMVVELMTLAGIFNIGDFIPAVEWLDLQGIAARMKSVHNRFDSFLNQILVEYRKTAREGENVDFLSSLMSSRIADGPDGVERQITD TEIKALLLNMFSAGTDTSSSTVEWAVAELIRHPKVLTQLQTELDTVAGRDRLVNELDIPNLPYLNAVVKEIFRLHPPTPLSLPRMAAESCEINGLHIPKG ATLLVNIWAIGRDPDVWSDPLRFDPGRFLPGGEKPGVGVKGSDFELIPFGAGRRICSGMSLGLRTVQLMTAVLAHGFDWELKDGVSAEELNMDEVFGISL QRAVPLVVRPKARLAEHVYRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021620 [exp]	0	1
					Lus10019190 [exp]	7.1	0.9025
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10030901 [exp]	16.6	0.8954
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10022292 [exp]	23.4	0.8929
AT4G21920			unknown protein		Lus10002068 [exp]	24.1	0.8726
AT4G18360			Aldolase-type TIM barrel famil...		Lus10038507 [exp]	26.9	0.8914
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	31.9	0.8826
AT1G56290			CwfJ-like family protein (.1)		Lus10021219 [exp]	40.0	0.8818
AT5G39150			RmlC-like cupins superfamily p...		Lus10003116 [exp]	44.0	0.8717
AT3G46540			ENTH/VHS family protein (.1)		Lus10023415 [exp]	44.3	0.8726
AT2G35270	AT-hook	GIK, 2-ATH, AHL...	GIANT KILLER, Predicted AT-hoo...		Lus10030966 [exp]	44.4	0.8782

Compare expression of checked genes

Lus10021620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.