Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 244 / 2e-65 dentin sialophosphoprotein-related (.1) AT5G07940 242 / 9e-65 unknown protein AT5G07970 226 / 4e-60 dentin sialophosphoprotein-related (.1) AT3G29385 85 / 3e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034693 [exp] 845 / 0 AT5G07940 126 / 3e-29 unknown protein Lus10040532 [exp] 408 / 2e-121 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1) Lus10021162 [exp] 409 / 8e-120 AT5G07940 270 / 4e-73 unknown protein Lus10034692 [exp] 182 / 4e-53 AT5G07980 66 / 2e-13 dentin sialophosphoprotein-related (.1) Lus10040531 [exp] 174 / 7e-50 AT5G07980 109 / 4e-28 dentin sialophosphoprotein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061400 [exp] 429 / 3e-126 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1) Potri.015G056400 [exp] 414 / 9e-121 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.012G066600 [exp] 317 / 4e-89 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1) Potri.015G056200 [exp] 298 / 8e-83 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021621 pacid=23180289 polypeptide=Lus10021621 locus=Lus10021621.g ID=Lus10021621.BGIv1.0 annot-version=v1.0 ATGCCTGACAACGAAGTTGGAAGTAGGATCCACAATTTTTTTGGTGAAGATATTTCTTCCCAGGTTCAACAGCACTCGCAAATTGCTGACGCAGCCTGGC CTGGGATAAGTATGAATCCTTGGGGTGGAAATCGCGGACAGATTACCACACCATTCATATCTGATTTAAAGAGCCGCAGTTTACAGGAATCAGTGGCTGA TTATGAGGGAGGATATGATAGTCAGCCACCAACCATGCAGAATGAGATGAGGTATGAACAATCAATTCAAAGAACTGAACATGGTAGAAGTCAATTCCAA GGGCAGCAGCCTGCTATAAATGGCTACTTCCAAGGTGATCAGGTTTTACAGACGAGTCAGACTGCAGCCGACAATCTAACAGAACAGGGGTTTTCTATGT TTGGATCTCACCAAGGAAATGGCTCAGAATATAATGAAAGAAATCCAGTACAGACCAAGTCTTCTGAATCACCAGTTAATTTTGATTTCTTTGGAGGTCC GAACCAGATGAGCGCCCATAATCCTGAAGCTATGCAATCTCTCTCACGACCATCCTTGGGGACTGGGGATATTATGCTGCAGCAGCAATTGATACTCAAG CAAATGCAAGAATTTCAGAGGCAGCGCCAGCTTCAGATGCAACAACAGCAGCAGCTGCAAGACTCGAGACATCTGAATAGTTTGAATCAAGTTTCCTCTC TTGGAATGCAGATACTAGGTAGGCAATCCCAATCTTTGATCAATGGAATTCCCGTGCAGGATGCTTCAGGTTATGGATTGCAACCTGGGATGATGGCAGC TAACACAAACTGGCAACAGAAAAACATGTCTGGAGACTCGCAGCGATCATCTACTGGGTCTGAATATCACCCGGAGCAAAACCAGGCACTTCAATTGATG GGCGTGGTTCCTCATCAGGCTGATCAATCTCTTTATGGTGTCCCTATTTCTGGAACAGGAGTTAATTCAACTCAATTTTCAGACATTCAAATGGATAAGG CCCCTGGCCAGCAAATGTCAAGCAATAGTTCCTTTCTAGCTAATCCGTATAGTGGGTTGTCAAACCATTTGAATGTTCAGGATGGAACTCTGGTTTTGAG ACAAGGATATCAAGTGAGAAACGAGACAGGCAGAACAAATATTGGAGGATTTGACAGTGGAATTAATTTTAAACATCTCCAGCAGAATGAAAGCAGTGGT CCAGCCGAGGAATATCATCGTACCAGGGAGCAAGGAATTCCATCAGAATCGTCTCATGAGAAGGCAAACATTCAGGTGTCTTCTCAAAATGCTGCTAAGT TAGATCCAACCGAAGAGAAGATTTTATATGGGTCAGATGATAATCTGTGGGATGCATTCAGCAGTAGTAATCATGTAGGTTCAGGAGGTTTTAATGCAAA CGAGGGCACTGACATGCTGGATGGTGCTTTTCCTTCTTTGCGAAATGGAGCATGGAGTGCTCTTATGCAGTCTGCTGTGGCCGAAACTTCTAGTGTGGAT ATGAACACACAAGAGGAATCGAGTGGTCCAAGTGGCCAGGCCGCCGAACCTCGTACTGGAGCTCGACACTTCCCGTCCGTAAATGATGCTGGAAAACAAA AAACAGCTTGGGCGGGTAATAGTTCTCAAACTGTATCAACCATAAATAATACCTTCAATTGCTCTGGTGACAATGATACCAGCACGAACAGTAATGCGAT GCAAAGATTTGCTTGTTCTGGCATTAGCTCTTCACATGATGTGAGTGACAGGTCACAAGTGGATTCTTTTTGGCAATATTCTCAGCAGTTTGAAAACAGT AATAAAAAATTGCTTGATGATAGCCATCAACAAAAAGATGTTTCAGGAAGCCATAATCATGAAAATGCTGTCCATACTTTCAATGGCGATCCAAGTGCAA AGAGTGATTCACATCCTTTAACCAATCAGTCGGACTTTTCCCTGCACAATCCAAGAGGTGAGAAATTCGTTGGACAAACTAATCGGGGGAGAACTTCAGC TCCATTTACCCATGGGTTTCCCTATACAAGAACTCGTACTCAAGACTTGGACACACAAGAAATTGGCGGGGAGGCATCTATCAATCAATCTGCGAACGAT GCATATGATAATTTTGTATCCCAGGTGAAGCAGACAAATGAGGCTGTTGTTGACGGAGCTCAATCAAGTCAATCAGGACAGACCTCTGTGCTTGACACTT CCAGGGGAACAGCATTTAGTGATGTTGCTTCTTCTGCCGTGGTTTCCCGCCTTAATAACTACCAAAATGATAAGGATTATGGTCAGCATTTTCCTGTACT GGAACAAACATCTACATCCCAGTCTTATGCAGTGTCTGCTTTGCAGCAGGATGAGTTTTCAAGAATGTATTCAACTATGCGAACCAGTACTTCAAGTAAA CTCCCTCCATTTGGTACACCTTTCAGAGCCTCGTCTAATGTGCCTGAGTCCGATATTCAATCAAACAGCATTTCCAAAATCACTTCTTGGCCACAAAAAT CAGTATACCAATATCCACAAGCAAGTGGAAGTGATCCTTCTGCAACTGGTGCCACTTCTGTCAAAATTGAATTGACTGGGAAAGGACAGCTGCAAAAAGA TCAGAGCCAGCTAATTAACCCTGTAAATGACTTCTCCCAGAAGGTTATTAGTCCCTTGCAAGGAAATGACTTGATTATAAATCGAGCGAGTAGCACTCAA ATGAATATTGCAGCTTTTAGGCGCTCACCTAGTGCATCTTTGAATCAAAACTACTCATTGCTGCATCAAGTTGAGGATATGAAGAATCCAGAGATAGATC CAAATGTTCGGAGTTTGAAGAGATTGAAGGCTTCTGATGGTTTGGTTAACCCTCAGTTAGCAACTTCTGGGAGTCGACAACAGTTATATGGATACAATAA CATGGTCAAAGGTGCTTCATTGAATAATTCCCGCAGTTCCCCTGATGACCCAAACCAGGGTCCAAATCTACCGTCTCATGATATGCAGGAGTTTGGTGGG AACAATTCTGGAAATTTCACAGATACCAACATGTTGGCTTCTAGTAGAGATGAACCTTCCAAGATTAGCCACCAGATGGCTCCATCATGGTTTAGTCAGT ATGGCAGCTTAAAAAATGGACAGATCGTCTTATCCACATACGATGCTGGAAAAGTTCCTGTTACTAAGCATCCAGAATTAGCTCTTAGTGGGGGCAGTTC AGCAGAATCGGAATGGTCAAAGACAGTTAATCGTGTGAGGGAGAAGGTGGAAGATGACACTGGAATTGTACTTAACGGGCCGCCTGCCTTAAAATCAAAG AGAAGAATGATATTGACGACACAGCTTATGCAGTTATTGCTTCATCCTCCTCCAGCATGGGTTATGTATGCCGATGCAGTTGCACATTATGAGAGTGCTG GTCATTTTGTTGCCCGGTCGACACTAGGAGATGTATGTGGTTCGCTCTCTGGCTCTGCAAGTGACACTTCTCCACCTTCCAATAGTGAGAAAAAGCTGCC TGAGAGCGGCAGAATGTCTAAAAGTGCAAGTGATCAACACTTCTTGAAAGTCATGGAAGATCTCATCAGCAGAACGAGGAAAGTTGAAACTGACTTGCCG AGATTGGATAAGAGCTTGTCGGTCCTAGATTTGAGAGTGGAATGTGAAGATTTAGAGAGGTTCTCTGTGATTAATCGGTTTGCGAAGTTCCATAGTCCAG GCCGAACAGCTGGAAGAGCAGATACTTCATCCTCGGGGAGTGCTGCTAATGTCCAGATGTACTTTCTCCAGAGATATGTTACTGCAGTCCCCTTCCCTAG GAACATCCCAGACAGGGTACTGTGCCTTTCTCTTTGA
AA sequence Show only first row Show all	>Lus10021621 pacid=23180289 polypeptide=Lus10021621 locus=Lus10021621.g ID=Lus10021621.BGIv1.0 annot-version=v1.0 MPDNEVGSRIHNFFGEDISSQVQQHSQIADAAWPGISMNPWGGNRGQITTPFISDLKSRSLQESVADYEGGYDSQPPTMQNEMRYEQSIQRTEHGRSQFQ GQQPAINGYFQGDQVLQTSQTAADNLTEQGFSMFGSHQGNGSEYNERNPVQTKSSESPVNFDFFGGPNQMSAHNPEAMQSLSRPSLGTGDIMLQQQLILK QMQEFQRQRQLQMQQQQQLQDSRHLNSLNQVSSLGMQILGRQSQSLINGIPVQDASGYGLQPGMMAANTNWQQKNMSGDSQRSSTGSEYHPEQNQALQLM GVVPHQADQSLYGVPISGTGVNSTQFSDIQMDKAPGQQMSSNSSFLANPYSGLSNHLNVQDGTLVLRQGYQVRNETGRTNIGGFDSGINFKHLQQNESSG PAEEYHRTREQGIPSESSHEKANIQVSSQNAAKLDPTEEKILYGSDDNLWDAFSSSNHVGSGGFNANEGTDMLDGAFPSLRNGAWSALMQSAVAETSSVD MNTQEESSGPSGQAAEPRTGARHFPSVNDAGKQKTAWAGNSSQTVSTINNTFNCSGDNDTSTNSNAMQRFACSGISSSHDVSDRSQVDSFWQYSQQFENS NKKLLDDSHQQKDVSGSHNHENAVHTFNGDPSAKSDSHPLTNQSDFSLHNPRGEKFVGQTNRGRTSAPFTHGFPYTRTRTQDLDTQEIGGEASINQSAND AYDNFVSQVKQTNEAVVDGAQSSQSGQTSVLDTSRGTAFSDVASSAVVSRLNNYQNDKDYGQHFPVLEQTSTSQSYAVSALQQDEFSRMYSTMRTSTSSK LPPFGTPFRASSNVPESDIQSNSISKITSWPQKSVYQYPQASGSDPSATGATSVKIELTGKGQLQKDQSQLINPVNDFSQKVISPLQGNDLIINRASSTQ MNIAAFRRSPSASLNQNYSLLHQVEDMKNPEIDPNVRSLKRLKASDGLVNPQLATSGSRQQLYGYNNMVKGASLNNSRSSPDDPNQGPNLPSHDMQEFGG NNSGNFTDTNMLASSRDEPSKISHQMAPSWFSQYGSLKNGQIVLSTYDAGKVPVTKHPELALSGGSSAESEWSKTVNRVREKVEDDTGIVLNGPPALKSK RRMILTTQLMQLLLHPPPAWVMYADAVAHYESAGHFVARSTLGDVCGSLSGSASDTSPPSNSEKKLPESGRMSKSASDQHFLKVMEDLISRTRKVETDLP RLDKSLSVLDLRVECEDLERFSVINRFAKFHSPGRTAGRADTSSSGSAANVQMYFLQRYVTAVPFPRNIPDRVLCLSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07940			unknown protein		Lus10021621 [exp]	0	1
AT5G15270			RNA-binding KH domain-containi...		Lus10030689 [exp]	2.4	0.9036
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10028458 [exp]	6.3	0.9209
AT1G59760		AtMTR4	homolog of yeast MTR4, RNA hel...		Lus10007442 [exp]	7.4	0.9094
AT2G24530			unknown protein		Lus10026225 [exp]	8.0	0.8570
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10015946 [exp]	8.3	0.9133
AT4G05420		DDB1A	damaged DNA binding protein 1A...		Lus10033455 [exp]	12.2	0.8771
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	13.3	0.9171
AT4G10320			tRNA synthetase class I (I, L,...		Lus10024041 [exp]	14.0	0.9010
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	14.9	0.8862
AT4G38440		IYO	MINIYO, unknown protein		Lus10025099 [exp]	15.7	0.8745

Compare expression of checked genes

Lus10021621 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.