Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07950 264 / 1e-87 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034694 [exp] 543 / 0 AT5G07950 306 / 5e-104 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051500 [exp] 325 / 1e-111 AT5G07950 276 / 1e-92 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021622 pacid=23180283 polypeptide=Lus10021622 locus=Lus10021622.g ID=Lus10021622.BGIv1.0 annot-version=v1.0 ATGGAAACTCCGGTACGCAGTACAGCGTCTACTTCTCATCAAAGCCCTAACGTCGCCACCGCCTCGCCGCTGCCGCCACCGTCATCGATCACGCGGCTAT GGAGGCCTTCCGCTCAGCGGAATCTGAGGAACCAGTGGTCGAAGTTGGCTCAGCTCCGTTCAGAATGGACGTCGTCTTCTTCCGCCGGAAGATCTCACGC CACCTCCCTCGTCAACGCGCATCTCTCCCAAAAGTACCTGCCGATGATGGAGCTCGGAGTTCTGAGTGACATGCCAAGTGTTCGAGAGAAAGCCTCTTCC AAGCTGTTGAAACAGCAGGAGCTTCATCGAACTAAACTTCTATCTTCATACAAAACTCTGCTGGGTGTAGTAGCTCAAATAGTGGCCGTCAGTAAATCCA TGAGGATCTATGCGAATAGAGCAGGCAGTGGCGGTAGTTCAATCATGCAGTTTTCTGCCATCAGCTTAGACGATAACGACAGTGGCGACGGTGGGGGGAT CCCGGTGTTCACATTTTGGTCTATCGCACTTTTCGAGCAGTTGGCAGATGAGCTTGTCCAGATGTTTGTATCTGAACTGACTATGAAGCGGCTGATCGTG GTGGAGCTACTTAATATCAGTAGTGAAGTTGCAAAAGAGAAGGAGATATGCTGGTCAAATGAGCTCTATATTGGAGAATTCGATGAACTGAGGCAATGCA ACCTTTATTCAAAGGAAATTGATCAGCCAATTCAGCCAAGATTGATAGAGGTGAAATCTAACATCAACACCGAGTCCATCAAATTTGTAGGTCAACCTAA CTCGGAGACATTGCAGGTCTATTTGACAGCATGGCTTTGCGAGGTTAACATAGATACCCAGAGGGTTGACGAAATCCTTGCAATGGTTGGGGAGGAAATG CATGTCAACCTTTCATGA
AA sequence Show only first row Show all	>Lus10021622 pacid=23180283 polypeptide=Lus10021622 locus=Lus10021622.g ID=Lus10021622.BGIv1.0 annot-version=v1.0 METPVRSTASTSHQSPNVATASPLPPPSSITRLWRPSAQRNLRNQWSKLAQLRSEWTSSSSAGRSHATSLVNAHLSQKYLPMMELGVLSDMPSVREKASS KLLKQQELHRTKLLSSYKTLLGVVAQIVAVSKSMRIYANRAGSGGSSIMQFSAISLDDNDSGDGGGIPVFTFWSIALFEQLADELVQMFVSELTMKRLIV VELLNISSEVAKEKEICWSNELYIGEFDELRQCNLYSKEIDQPIQPRLIEVKSNINTESIKFVGQPNSETLQVYLTAWLCEVNIDTQRVDEILAMVGEEM HVNLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07950			unknown protein		Lus10021622 [exp]	0	1
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	3.2	0.9104
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10036509 [exp]	3.2	0.9193
AT3G07440			unknown protein		Lus10009585 [exp]	3.7	0.8908
AT4G06599			ubiquitin family protein (.1)		Lus10012700 [exp]	5.9	0.8768
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	7.9	0.8939
AT4G02120			CTP synthase family protein (....		Lus10010020 [exp]	7.9	0.8990
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	8.4	0.8928
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	8.9	0.8984
AT1G12140		FMOGS-OX5 ,FMO ...	flavin-monooxygenase glucosino...		Lus10032247 [exp]	9.6	0.8727
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	10.2	0.8988

Compare expression of checked genes

Lus10021622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.