Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07920 1070 / 0 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) AT5G63770 687 / 0 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G57690 126 / 1e-30 ATDGK4 diacylglycerol kinase 4 (.1) AT4G28130 122 / 3e-29 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT2G20900 122 / 3e-29 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4) AT2G18730 120 / 2e-28 ATDGK3 diacylglycerol kinase 3 (.1) AT4G30340 114 / 9e-27 ATDGK7 diacylglycerol kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015742 [exp] 1177 / 0 AT5G07920 1053 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10003460 [exp] 1160 / 0 AT5G07920 1050 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10034701 [exp] 990 / 0 AT5G07920 746 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10010896 [exp] 613 / 0 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10012719 [exp] 613 / 0 AT5G63770 957 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10034702 [exp] 433 / 3e-149 AT5G07920 400 / 8e-137 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10015514 [exp] 125 / 3e-30 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1) Lus10019987 [exp] 125 / 3e-30 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10031612 [exp] 118 / 1e-27 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066300 [exp] 1150 / 0 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.007G097900 [exp] 632 / 0 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 627 / 0 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.018G096700 [exp] 129 / 1e-31 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 127 / 6e-31 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.013G148500 [exp] 121 / 9e-29 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.001G408500 [exp] 120 / 2e-28 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain CL0006 [flax] [poplar] C1 PF00130 [flax] [poplar] C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain)
Representative CDS sequence Show only first row Show all	>Lus10021625 pacid=23180304 polypeptide=Lus10021625 locus=Lus10021625.g ID=Lus10021625.BGIv1.0 annot-version=v1.0 ATGGACGACGATAGAGAAATTGGGATCCTGTTCCCTGGTTGGAACACCAAGAATCCGACTGAATCCTATGTTTTCATGCTGTCCTGTTTTCTTGCTGCTT TAGTTGGGATTTTGACTATCGCTTACACCAGTGTCCAATGGAGAAGAAATATCAATCTGAGTTGGATGAAGGCTATAGCCAGATCGAAGAAAAATCCAAA GACGAGGGATAAGGTTCCTGCAGCCCAGCATACATGGGTGCTTGAATCCGTGTCTCGTGGGAAGAATCTGAATTGTTGTGTTTGCTTAAAATCCATGTCC CCTTCTCAAACTCTTGGCCCTATGCTGGCATCGGACAGTTTCATTCACTGTTGCAGTATTTGTGCTGCAGCATCTCACCTAGGATGCTCCGCTAATGCAC CAAAGGACTGCAAGTGTGTTTCTATGGTTGGATGTGATACTGTCATGCATCAATGGGCTGTTCGGTGGACTGAGATAATGGATCAACCTGATGAAACTTC CTTTTGTAGTTATTGCGAAGAACCATGTAGTGGGCCTTTCCTTGGTGGATCACCAATATGGTGTTGCTTTTGGTGTCAAAGACTTGTACATGTTGATTGC CATAGTAGTATGTCCAGTGAAACTGGTGATATTTGTGATCTAGGTACTTTTAGAAGGTTGATTGTATCACCCATGTATGTTCGTGAGCTTCACCGGAATT CGCCAGGTGGATTTTTGAGTTCAATCACACATGGGGCTAATGAAATTGCTTCTTCAGTGCGTGCAACTATCAGGAGTCAAAGCAAGAAGCACAAACATGG CAACAAAAATTCTGTTCAAACGGGAGATAGTGGTAGCACTGGTGATCCGTCCTCTGAGAGCATACCGGACCACCATCCTTCTCCAAATGGTTGCGATGGT GTGGAGGATAGCTGTCCTGGTAGCATGAATGTGGGGAGTCCTCTCCATGCTAGTGTAAATGTGGATAATAAGCTCGAATCAAGACCGAGTTTCAAAAGGA GCGGCTCGTTTAACCAGAAGGATGAATCACATGTATTAAGGATGAAACAGAAATATGAGATAATCGATCTGCCATCTGATGCCCGTCCCCTGCTTGTTTT TATTAACCAGAAGAGTGGTGCAAGGCGTGGCGACTCCCTTAAGCAACGACTGAACTTGCTTCTAAATCCTGTTCAGGTATTTGAATTGAGTTCAACGCAG GGGCCAGAGGTTGGACTTTACCTTTTTAGGAAAGTGCCTCACTTCAGAATTCTTGTATGTGGAGGAGATGGCACGATGGGTTGGGTTCTTAATGCTATAG ACAAGCTAAATTTTGTATCTCCTCCACCTGTAGCTACTCTTCCTGCTGGAACTGGAAATGATCTGGCCAGAGTACTTTCCTGGGGAAGTGGTTTGGGGGC ATTGGAAAAACAAGGAGGTCTCTGCACATTATTGCAGGATATTGAACATGCTGCTGTAACCGTCCTTGATAGGTGGCAGCATTTGTTTGCAGGTGTTGGT TGCGATGCCAAGGTTGCTCTTGAAATTCATAACTTAAGGGAAGAAAATCCTGAGAAGTTTTATAACCAGTTTATGAACAAAGTTCTTTATGCAAGAGAAG GAGCAAAGACTATAATGGACCGCACATTTGCAGATTTTCCATGGCAAGTCAGACTGGAAGTGGATGGTGTGGAAATAGAGGTCCCCGAGGACGCTGAAGG AGTACTTGTTGCTAACATTGGAAGCTACATGGGTGGTGTGGACTTGTGGCAAAATGAGGATGAATCGTATGACAGTTTCGATCCGCAATCAATGCATGAT AAGTTACTTGAAGTTGTGAGCATATCTGGAACGTGGCACTTGGGAAAGCTTCAGGTGGGACTCTCACGTGCTCGTAGGCTTGCACAAGGGGAGTTGATTA AGATACAGCTGTTTGCTCCTTTGCCTGTCCAAATTGACGGGGAGCCTTGGCTTCAGCAACCATGTACCTTAATCGTAACTCATCACGGCCAGGCCTTTAT GTTGAAAAGGGCAGCAGAAGAACCTCTGGGACATGCAGCTGCGATAATAGCCGATGTGCTTGCGAATGCCGAAACTAACCATGTTATCAATGCCTCTCAA AAGCGAGATCTTCTCCATGAAATGGCTCTCAGGCTATGTTGA
AA sequence Show only first row Show all	>Lus10021625 pacid=23180304 polypeptide=Lus10021625 locus=Lus10021625.g ID=Lus10021625.BGIv1.0 annot-version=v1.0 MDDDREIGILFPGWNTKNPTESYVFMLSCFLAALVGILTIAYTSVQWRRNINLSWMKAIARSKKNPKTRDKVPAAQHTWVLESVSRGKNLNCCVCLKSMS PSQTLGPMLASDSFIHCCSICAAASHLGCSANAPKDCKCVSMVGCDTVMHQWAVRWTEIMDQPDETSFCSYCEEPCSGPFLGGSPIWCCFWCQRLVHVDC HSSMSSETGDICDLGTFRRLIVSPMYVRELHRNSPGGFLSSITHGANEIASSVRATIRSQSKKHKHGNKNSVQTGDSGSTGDPSSESIPDHHPSPNGCDG VEDSCPGSMNVGSPLHASVNVDNKLESRPSFKRSGSFNQKDESHVLRMKQKYEIIDLPSDARPLLVFINQKSGARRGDSLKQRLNLLLNPVQVFELSSTQ GPEVGLYLFRKVPHFRILVCGGDGTMGWVLNAIDKLNFVSPPPVATLPAGTGNDLARVLSWGSGLGALEKQGGLCTLLQDIEHAAVTVLDRWQHLFAGVG CDAKVALEIHNLREENPEKFYNQFMNKVLYAREGAKTIMDRTFADFPWQVRLEVDGVEIEVPEDAEGVLVANIGSYMGGVDLWQNEDESYDSFDPQSMHD KLLEVVSISGTWHLGKLQVGLSRARRLAQGELIKIQLFAPLPVQIDGEPWLQQPCTLIVTHHGQAFMLKRAAEEPLGHAAAIIADVLANAETNHVINASQ KRDLLHEMALRLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	0	1
AT4G01290			unknown protein		Lus10007916 [exp]	1.4	0.7889
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10018939 [exp]	2.8	0.8005
AT3G03860		ATAPRL5	APR-like 5 (.1)		Lus10020283 [exp]	7.7	0.7870
AT5G45900		ATAPG7, ATG7, A...	AUTOPHAGY-RELATED 7, AUTOPHAGY...		Lus10015289 [exp]	8.7	0.7776
AT1G49960			Xanthine/uracil permease famil...		Lus10034125 [exp]	9.8	0.7361
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10037070 [exp]	12.8	0.7708
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Lus10024034 [exp]	23.0	0.7236
AT2G28310			Protein of unknown function (D...		Lus10021463 [exp]	23.1	0.6193
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10019097 [exp]	23.9	0.7344
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10036577 [exp]	26.2	0.7514

Compare expression of checked genes

Lus10021625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.