Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15490 875 / 0 UGD3 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) AT3G29360 868 / 0 UGD2 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) AT5G39320 853 / 0 UDP-glucose 6-dehydrogenase family protein (.1) AT1G26570 841 / 0 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.1) AT3G01010 249 / 2e-81 UDP-glucose/GDP-mannose dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034703 [exp] 963 / 0 AT5G15490 882 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10026656 [exp] 867 / 0 AT1G26570 868 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10004656 [exp] 861 / 0 AT1G26570 864 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10026657 [exp] 854 / 0 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10037096 [exp] 801 / 0 AT1G26570 815 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10036887 [exp] 429 / 3e-150 AT3G29360 444 / 5e-157 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Lus10036886 [exp] 325 / 3e-110 AT5G15490 327 / 3e-111 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10021639 [exp] 166 / 3e-50 AT1G26570 145 / 6e-43 UDP-glucose dehydrogenase 1 (.1) Lus10004657 [exp] 121 / 8e-33 AT5G15490 133 / 4e-38 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118600 [exp] 868 / 0 AT5G15490 879 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.017G092000 [exp] 867 / 0 AT3G29360 898 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.010G159800 [exp] 844 / 0 AT5G15490 853 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.008G094300 [exp] 833 / 0 AT3G29360 858 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0106 [flax] [poplar] 6PGD_C PF00984 [flax] [poplar] UDPG_MGDP_dh UDP-glucose/GDP-mannose dehydrogenase family, central domain CL0039 [flax] [poplar] HUP PF03720 [flax] [poplar] UDPG_MGDP_dh_C UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CL0063 [flax] [poplar] NADP_Rossmann PF03721 [flax] [poplar] UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10021626 pacid=23180254 polypeptide=Lus10021626 locus=Lus10021626.g ID=Lus10021626.BGIv1.0 annot-version=v1.0 ATGGTGAAGATCTGCTGCATTGGAGCTGGGTACGTGGGAGGTCCCACCATGGCTGTGATTGCCCTCAAGTGTCCTTCCATTCAAGTCGCTGTTGTCGACA TTTCTGTGCCCAGGATCGCTGCGTGGAACAGCGACACTCTGCCGATTTACGAGCCCGGTCTGGAAGACGTCGTAAAGCAGTGCAGGGGCAAGAACTTGTT CTTCAGTACTGATGTTGAGAAGCACGTTGCAGAGGCTGACATTATCTTCGTCTCTGTTAATACTCCCACCAAGACCAGGGGACTAGGAGCTGGAAAGGCA GCAGATTTAACATACTGGGAAAGCGCAGCCAGGATGATAGCCGACGTCTCCAAATCCGACAAGATCGTGGTCGAGAAATCCACCGTCCCGGTCAAAACAG CCGAAGCGATCGAGAAAATCCTGACCCACAACAGCAAAGGAATCAACTACCAAATTCTTTCAAACCCTGAGTTCCTCGCTGAAGGCACAGCAATCCAGGA CCTCTTCAGTCCTGACAGGGTACTAATCGGCGGCCGCGAAACTCCGGCGGGTCTGAAAGCAGTCCAATCCTTAAAACAAGTTTACTCCAACTGGGTTCCT GAAGACAGGATCATCACCACCAATTTGTGGTCGGCCGAGCTCTCCAAGTTGGCCGCCAACGCTTTCCTGGCACAGAGGATCTCCTCTGTAAATGCCATGT CAGCATTGTGCGAAGCCACGGGAGCGAATGTTGCCGAGGTTTCGAATGCTGTCGGAAAAGACACGAGGATCGGTCCCAAGTTTCTGAATTCGAGCGTTGG GTTTGGTGGGTCTTGCTTTCAGAAGGATATTCTGAGCTTGGTGTATATTTGCGAGTGTAATGGGTTGGCTGAGGTGGCCAACTACTGGAAGCAGGTGATT AAGATCAATGACTATCAGAAGACCCGGTTCGTGAATCGGGTCGTTTCGTCTATGTTTAATACGGTTTCGGGGAAGAAGATTGCTGTTCTAGGTTTTGCGT TTAAGAAGGATACTGGGGATACAAGGGAGACCCCTGCTGTTGATGTTTGTAAAGGGCTGTTGGGTGACAAAGCTCTGCTCAGTATATATGACCCTCAGGT GACGGAAGACCAAATCGAGAGGGATTTGGCACATAGCAAGTTCGACTGGGACCACCCGATGCATCTACAGCCAATGAGCTGCAACTCGAAGAACTTTAAA GAACAAGTGAGCATAGTGTCGGATGTGTACGAGGCTACTAAGGATGCTCACGGAGTGTGCATTCTGACCGAGTGGGACGAGTTCAAGAAACTAGACTACA AGAAGATATACGACAAGATGCAAAAGCCAGCATTTGTGTTTGATGGGAGGAACGTGGTTGATGCTGTAAAGTTGAGGGAAATTGGTTTCATTGTTTACTC CATTGGGAAGCCTTTGGATAATTGGCTCCAGGACATGCCTGTTTTGGCTTGA
AA sequence Show only first row Show all	>Lus10021626 pacid=23180254 polypeptide=Lus10021626 locus=Lus10021626.g ID=Lus10021626.BGIv1.0 annot-version=v1.0 MVKICCIGAGYVGGPTMAVIALKCPSIQVAVVDISVPRIAAWNSDTLPIYEPGLEDVVKQCRGKNLFFSTDVEKHVAEADIIFVSVNTPTKTRGLGAGKA ADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINYQILSNPEFLAEGTAIQDLFSPDRVLIGGRETPAGLKAVQSLKQVYSNWVP EDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVAEVSNAVGKDTRIGPKFLNSSVGFGGSCFQKDILSLVYICECNGLAEVANYWKQVI KINDYQKTRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAVDVCKGLLGDKALLSIYDPQVTEDQIERDLAHSKFDWDHPMHLQPMSCNSKNFK EQVSIVSDVYEATKDAHGVCILTEWDEFKKLDYKKIYDKMQKPAFVFDGRNVVDAVKLREIGFIVYSIGKPLDNWLQDMPVLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10021626 [exp]	0	1
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	5.1	0.9404
AT3G02230		ATRGP1, RGP1	ARABIDOPSIS THALIANA REVERSIBL...		Lus10022443 [exp]	5.9	0.9172
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10034703 [exp]	9.3	0.9226
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	10.7	0.9298
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	16.1	0.9216
AT5G45120			Eukaryotic aspartyl protease f...		Lus10018286 [exp]	16.5	0.9128
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10011123 [exp]	17.7	0.8920
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	21.5	0.9067
AT5G60520			Late embryogenesis abundant (L...		Lus10036107 [exp]	24.4	0.9157
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	31.2	0.9058

Compare expression of checked genes

Lus10021626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.