Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61410 432 / 2e-154 RPE, EMB2728 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) AT3G01850 158 / 2e-47 Aldolase-type TIM barrel family protein (.1.2) AT1G63290 150 / 3e-44 Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001653 [exp] 497 / 5e-180 AT5G61410 476 / 6e-172 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10015715 [exp] 439 / 6e-157 AT5G61410 457 / 4e-164 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019083 [exp] 252 / 7e-84 AT5G61410 265 / 3e-89 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10019082 [exp] 143 / 2e-43 AT5G61410 136 / 4e-41 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Lus10035219 [exp] 147 / 2e-41 AT3G01850 372 / 6e-130 Aldolase-type TIM barrel family protein (.1.2) Lus10032052 [exp] 144 / 3e-41 AT1G63290 362 / 4e-128 Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062100 [exp] 436 / 1e-155 AT5G61410 494 / 4e-179 EMBRYO DEFECTIVE 2728, D-ribulose-5-phosphate-3-epimerase (.1.2) Potri.001G332700 [exp] 163 / 3e-49 AT3G01850 387 / 2e-138 Aldolase-type TIM barrel family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00834 [flax] [poplar] Ribul_P_3_epim Ribulose-phosphate 3 epimerase family
Representative CDS sequence Show only first row Show all	>Lus10021627 pacid=23180311 polypeptide=Lus10021627 locus=Lus10021627.g ID=Lus10021627.BGIv1.0 annot-version=v1.0 ATGTCCACCGTTTCTTTCTGTTGCTCGGCTCGGATCAATGGATTAGGAGGTGAACTTCGGATTCACAGAAACAATCCTTTTCAACAAACTTCATTTCCCC TTCGCAGGAGAGCAGTTACGTCGGTCGTCAGGGCATCCCGTGTTGATAAGTTCTCAAAAAGTGATATCATTGTTTCCCCGTCCATCCTTTCTGCTAATTT CGCGAAGTTGGGAGAACAGGTAAAAGCAGTCGAGCTGGCAGGATGTGATTGGATTCATGTTGATGTTATGGATGGTCGTTTTGTGCCAAACATCACAATC GGACCTCTTGTGGTTGATGCCTTGCGTCCTGTCACAGACCTTCCCTTAGATGTGCACTTGATGATTGTGGAACCTGATCAAAGGGTGCCAGATTTTATCA AGGCAGGAGCTGACATTGTCAGTGTTCACTGTGAACAGTCTTCCACCATTCATTTGCATCGTACTGTAAACCAGATAAAAAGTCTTGGAGCCAAAGCTGG AGTTGTCCTTAACCCTGGTACCCCGTTGACTGCTATAGAGTATATTCTTGATGTGGTTGATCTCGTCTTGATTATGTCGGTGAACCCTGGATTCGGCGGG CAGAGCTTCATTGAGAGCCAAGTAAAGAAGATTTCTGACTTGAGGAGATTGTGTGTTGAGAAGGGAGTGAACCCATGGATAGAGGTAGATGGTGGCGTTG GTCCCAAAAATGCGTACAAGGTTATCGAGGCTGGAGCTAATGCTTTAGTTGCTGGTTCCGCTGTATTTGGAGCCCCAGATTACGCTGAAGGTACTGACTT TTTATACATCGCAGCTGGGTGGCAGATTTTGATGTTAGATGACAAATTGGCTGATCCTGAGTTCCTTGGTGCTTGA
AA sequence Show only first row Show all	>Lus10021627 pacid=23180311 polypeptide=Lus10021627 locus=Lus10021627.g ID=Lus10021627.BGIv1.0 annot-version=v1.0 MSTVSFCCSARINGLGGELRIHRNNPFQQTSFPLRRRAVTSVVRASRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI GPLVVDALRPVTDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPGTPLTAIEYILDVVDLVLIMSVNPGFGG QSFIESQVKKISDLRRLCVEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEGTDFLYIAAGWQILMLDDKLADPEFLGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10021627 [exp]	0	1
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10001653 [exp]	1.0	0.9722
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10038986 [exp]	2.0	0.9227
AT5G19540			unknown protein		Lus10023641 [exp]	5.8	0.8772
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	8.5	0.9088
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10009710 [exp]	11.1	0.8756
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10019821 [exp]	12.4	0.8908
AT2G35260			unknown protein		Lus10040089 [exp]	12.6	0.8968
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Lus10026241 [exp]	13.2	0.9207
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	14.5	0.9176
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	14.5	0.9146

Compare expression of checked genes

Lus10021627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.