Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74410 184 / 4e-58 RING/U-box superfamily protein (.1) AT4G35840 100 / 2e-25 RING/U-box superfamily protein (.1) AT5G66070 99 / 3e-25 RING/U-box superfamily protein (.1.2) AT2G17730 99 / 4e-25 NIP2 NEP-interacting protein 2 (.1.2) AT3G20395 79 / 1e-17 RING/U-box superfamily protein (.1) AT5G05280 72 / 3e-15 RING/U-box superfamily protein (.1) AT5G01880 71 / 4e-15 RING/U-box superfamily protein (.1) AT2G20030 72 / 2e-14 RING/U-box superfamily protein (.1) AT3G10910 69 / 2e-14 RING/U-box superfamily protein (.1) AT4G28890 71 / 4e-14 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001654 [exp] 376 / 1e-133 AT1G74410 251 / 1e-84 RING/U-box superfamily protein (.1) Lus10028406 [exp] 101 / 6e-26 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 101 / 6e-26 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10021524 [exp] 74 / 2e-15 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10006493 [exp] 71 / 4e-14 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10024405 [exp] 68 / 5e-14 AT4G17905 95 / 9e-24 RING/U-box superfamily protein (.1) Lus10029037 [exp] 67 / 1e-13 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10034953 [exp] 69 / 2e-13 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10005617 [exp] 65 / 4e-13 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G108200 [exp] 103 / 9e-27 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 102 / 3e-26 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.001G435800 [exp] 89 / 3e-21 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 73 / 9e-16 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 71 / 2e-14 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.011G063100 [exp] 69 / 6e-14 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.013G091300 [exp] 69 / 6e-14 AT3G10910 153 / 2e-47 RING/U-box superfamily protein (.1) Potri.002G017400 [exp] 67 / 1e-13 AT5G42200 154 / 2e-48 RING/U-box superfamily protein (.1) Potri.008G054200 [exp] 67 / 1e-13 AT1G20823 80 / 6e-19 RING/U-box superfamily protein (.1) Potri.005G244500 [exp] 67 / 2e-13 AT5G42200 149 / 3e-46 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021628 pacid=23180330 polypeptide=Lus10021628 locus=Lus10021628.g ID=Lus10021628.BGIv1.0 annot-version=v1.0 ATGGATGTTACGAGTAACTGCAACTGTAGCACCGCCGAATCCTGCCCTGTCTGCGGCGGATATAATAATAGCACGGAGGGCCAATTCATGTCGTTAATGT CGGCCGTGGTTGAATACCAAGGGAATCGAGTTCTTGACAGCGTCCCCAGAATTGTCGCCGGAGCCATCTCCGGCGCCCTTACTGGCCTTTTCGCCATAGC TGGAGCTTGTACGGGAGCAATTACTGGGGCGTTTGCAGGTAGAGCGGCGGATTGTGGGGTTCTTAGGGGAGCTGGGTTAGGTGCTGTTGCTGGTGCTGTT CTTTCTGTTGAGGTTTTGGAAGCTTCTCGTGCTTACTGGGGTTTGGAACAGTCTGCTTCTGGAGGACCTTCTTCTATGGCAGATTTCCTAGAAGAGCTGT TCCGAGAGAGGTTTGTCGATCATGAGTTTACACCAGCAATGTTGACTGCTTACCATTGGCAGATATCCAACAACAACACAAACAACCAAGAGACGAACGA GGCTCGCGAGGAAGTTGTAGGATCGAGTAGAGGTCTATCAGGAGAGTCACTTGACAAGCTCCCATGTTACGAGATCAAGGCTACGCAAACTATCTTCTGC ACTATATGCTTACAGGATATTGGGAAAGGGGAAGTGGCTCGAAGCTTACCAAAGTGTCAACACAGTTTCCACATGGCCTGTGTGGATAAGTGGCTTGTAA GACATGGTTCTTGTCCTGTCTGTCGCCAAGATGTATAG
AA sequence Show only first row Show all	>Lus10021628 pacid=23180330 polypeptide=Lus10021628 locus=Lus10021628.g ID=Lus10021628.BGIv1.0 annot-version=v1.0 MDVTSNCNCSTAESCPVCGGYNNSTEGQFMSLMSAVVEYQGNRVLDSVPRIVAGAISGALTGLFAIAGACTGAITGAFAGRAADCGVLRGAGLGAVAGAV LSVEVLEASRAYWGLEQSASGGPSSMADFLEELFRERFVDHEFTPAMLTAYHWQISNNNTNNQETNEAREEVVGSSRGLSGESLDKLPCYEIKATQTIFC TICLQDIGKGEVARSLPKCQHSFHMACVDKWLVRHGSCPVCRQDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74410			RING/U-box superfamily protein...		Lus10021628 [exp]	0	1
AT4G24090			unknown protein		Lus10017325 [exp]	1.4	0.9110
AT2G38570			unknown protein		Lus10014180 [exp]	2.0	0.9236
					Lus10042279 [exp]	3.0	0.9053
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	3.2	0.8884
AT5G60335			Thioesterase superfamily prote...		Lus10009162 [exp]	6.3	0.8412
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	9.4	0.8387
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	9.8	0.8701
AT2G17695			unknown protein		Lus10028386 [exp]	9.9	0.8743
AT4G07990			Chaperone DnaJ-domain superfam...		Lus10012482 [exp]	10.4	0.8571
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10006068 [exp]	10.6	0.8674

Compare expression of checked genes

Lus10021628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.