Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61380 326 / 4e-103 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G46790 128 / 1e-31 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G24470 128 / 9e-31 APRR5 pseudo-response regulator 5 (.1) AT5G60100 124 / 5e-30 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G02810 113 / 6e-26 APRR7, PRR7 pseudo-response regulator 7 (.1) AT1G26670 89 / 5e-20 VTI1B, ATVTI12, VTI12 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) AT5G39510 88 / 1e-19 ZIG1, SGR4, ATVTI1A, ATVTI11, ZIG, VTI11 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) AT4G16110 93 / 2e-19 GARP ARR2 response regulator 2 (.1) AT3G29100 86 / 2e-19 ATVTI13, VTI13 vesicle transport V-snare 13 (.1.2) AT1G67710 91 / 4e-19 GARP ARR11 response regulator 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000566 [exp] 1016 / 0 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 707 / 0 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 706 / 0 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10008879 [exp] 133 / 2e-32 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10023229 [exp] 132 / 2e-32 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10015571 [exp] 131 / 6e-32 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10032934 [exp] 130 / 1e-31 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10026134 [exp] 117 / 3e-30 AT5G39510 255 / 3e-87 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Lus10023230 [exp] 115 / 1e-26 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061900 [exp] 647 / 0 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Potri.012G005900 [exp] 137 / 1e-33 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.015G002300 [exp] 133 / 2e-32 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 126 / 5e-30 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 120 / 4e-28 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.010G215200 [exp] 119 / 9e-28 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.008G046200 [exp] 116 / 1e-26 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.008G091000 [exp] 99 / 3e-23 AT1G26670 327 / 5e-115 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1) Potri.017G087700 [exp] 99 / 3e-23 AT5G39510 321 / 1e-112 SHOOT GRAVITROPSIM 4, VESICLE TRANSPORT V-SNARE 11, Vesicle transport v-SNARE family protein (.1) Potri.010G164300 [exp] 97 / 1e-22 AT1G26670 324 / 9e-114 VESICAL TRANSPORT V-SNARE 12, Vesicle transport v-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF06203 [flax] [poplar] CCT CCT motif CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0147 [flax] [poplar] Traffic PF12352 [flax] [poplar] V-SNARE_C Snare region anchored in the vesicle membrane C-terminus
Representative CDS sequence Show only first row Show all	>Lus10021629 pacid=23180300 polypeptide=Lus10021629 locus=Lus10021629.g ID=Lus10021629.BGIv1.0 annot-version=v1.0 ATGATCGCATTGACTCTGTGTCCTGACACTGCAGAGCAGAGGAAACAGAAAGTTTCTGAGATTAAAGCTGGATTGGATGATGCTGATGCTTTGGTGGCAA CAGACCAACGTGGCAGGGTACTGATGTCAACGGAGCGGCTTAACCAGTCCACGGACAGAATCAAGGACAGCAGAAGAACAATGCTTGAAACAGAAGAGCT AGGAGTGTCAATCCTTCAAGATCTGCATCAGCAACGCCAGGCTCTCCTACATGCCAACAGCAAGTTTAGTTTGAGAGCTGCCATGGACACGGGGAAGGGG AAGCTTATGGATTGTGCTGGTGCTGGTACGAGTGCTAATGGAGGAGATGGTTTCATTGATAGAAGTAGAGTGAGGATTTTGCTGTGTGATAATGATACTT CCAGCTCTGAGGAGGTCTTCTCTCTGCTTATCAAGTGTTCTTATCAGGTTACATCAGTAAAGTCTGCTAGGCAGGTGATTGATGCCTTGAATGCGGAAGG TCTGGATATTGATATCATACTTGCAGAAGTTGATCTTCCAATGAAGAAGGGGATGAAGATGTTGAAGTACATTACTCGGCATAAGGATTTGCAGCGAATT CCTGTGATCATGATGTCAGCGCAAGATGAAGTTTCCACTGTAGTCAAGTGCTTGAGATTTGGAGCAGCTGATTATCTTGTGAAGCCATTGCGTAGCAATG AGCTGTTAACCTTGTGGACACACATGTGGCGAAGGAGAAGGATGCTTGGGCTAGCTGAGAAAAGTATCTTGAACTATGAGTTGGACCCTGTGGCATCAGA CCATAGTGATGCTAATACAAACAGTACCACTTTATTCACTGACGAGACAAATGAAATTTCAAGAAAGAACCATGATCCTGAGACTGTGACATCGACTCAT ATAGATGCTGAACTGGTTGTGATTGCCGATGCTGTTGCTATCTCTGAACCTCTGCCTCAAAATCCTCGGGAATATCGGCCGGCTGTCCCGGGAATCACAG ACCGTCGACGAGCAGGACAATTCTCAGTCGGCCCAAAGAAGAGCGAGCTGAAGATTGGAAAAGTATCTTCTGCGTTCTTTACTTATGTGAAATCAATCCC AGTGAAAAGCAGTGCCCAAAGTATAGTTCAGGTTGAGGAGAGTGGGTTGAGGATGGAAGTTCAAGAGTGTACTGATGCTCAATTACCGGAGAATGGAGAG GCTTGGGAAAGTTATTCGCAGGGAGATGACTTCCGCAGCAGTGCTAGTGTTCCTGATTCTCTTTCTGTGGAAAGATCTTGCACTCCTCCCGGATCCAGAG AATATTCTGAATTGAATTTCAATGAAGACATGCTTGGATATCAAAGAAATGAACATCGGCCTCAAGCCTTGGGTTTACAAACTCAAAATTTCTTTTCTTA TTGCATGAATGGGGTTATGAATCAAGTTATGATGCCATCGCCACATCATCTATACCAGAAGAATATGCAGGAACTTCAGAGCCAGGCTGCATCAGCTGTG ATGATGTCTCAATACAATCATCTTCCGCAGCATAGACCTCACATGTCCGGACTGCCACCGTTTCCGTATCACCCAGCTGGCATGTGCTACCAACCTGGTC AAATGTCTGGTAATAGTTCGTTGCAGCATACATTTGGAAGTCAATCATTGGCTGAAACGAAAAATAACAAAGTAGATAGAAGAGAGGCGGCACTGATCAA GTTTAGGCAGAAAAGGAAGGACCGTTGCTTTGATAAGAAGATTAGGTACGTTAATCGGAAAAAGCTTGCTGAAAGGAGGCCTCGTGTACGTGGACAGTTT GTCAGGAAGTTGAATGGTGTAAATGTGGATCTTAATGGACTCCCTTCTGCCACTGATTGTGAAGATGAGGAAGAAGAGCACGATGAAATGGCATCGAGGG ACTGTGAGGATGAGGCACCATGA
AA sequence Show only first row Show all	>Lus10021629 pacid=23180300 polypeptide=Lus10021629 locus=Lus10021629.g ID=Lus10021629.BGIv1.0 annot-version=v1.0 MIALTLCPDTAEQRKQKVSEIKAGLDDADALVATDQRGRVLMSTERLNQSTDRIKDSRRTMLETEELGVSILQDLHQQRQALLHANSKFSLRAAMDTGKG KLMDCAGAGTSANGGDGFIDRSRVRILLCDNDTSSSEEVFSLLIKCSYQVTSVKSARQVIDALNAEGLDIDIILAEVDLPMKKGMKMLKYITRHKDLQRI PVIMMSAQDEVSTVVKCLRFGAADYLVKPLRSNELLTLWTHMWRRRRMLGLAEKSILNYELDPVASDHSDANTNSTTLFTDETNEISRKNHDPETVTSTH IDAELVVIADAVAISEPLPQNPREYRPAVPGITDRRRAGQFSVGPKKSELKIGKVSSAFFTYVKSIPVKSSAQSIVQVEESGLRMEVQECTDAQLPENGE AWESYSQGDDFRSSASVPDSLSVERSCTPPGSREYSELNFNEDMLGYQRNEHRPQALGLQTQNFFSYCMNGVMNQVMMPSPHHLYQKNMQELQSQAASAV MMSQYNHLPQHRPHMSGLPPFPYHPAGMCYQPGQMSGNSSLQHTFGSQSLAETKNNKVDRREAALIKFRQKRKDRCFDKKIRYVNRKKLAERRPRVRGQF VRKLNGVNVDLNGLPSATDCEDEEEEHDEMASRDCEDEAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10021629 [exp]	0	1
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	1.0	0.8961
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	3.5	0.8313
AT3G01310			Phosphoglycerate mutase-like f...		Lus10015343 [exp]	3.9	0.8107
					Lus10014061 [exp]	5.3	0.8026
AT3G61120	MADS	AGL13	AGAMOUS-like 13 (.1)		Lus10012545 [exp]	7.7	0.7749
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	8.1	0.7908
AT2G28840		XBAT31	XB3 ortholog 1 in Arabidopsis ...		Lus10040829 [exp]	8.1	0.7891
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10019169 [exp]	11.0	0.7542
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	11.0	0.7835
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	11.8	0.7858

Compare expression of checked genes

Lus10021629 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.