Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61370 538 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G60960 151 / 5e-40 PNM1 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 127 / 3e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 127 / 3e-31 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G52640 119 / 1e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 112 / 4e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46100 110 / 7e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 111 / 8e-26 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G77360 109 / 2e-25 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G74900 108 / 3e-25 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000207 [exp] 963 / 0 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000564 [exp] 870 / 0 AT5G61370 566 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034673 [exp] 142 / 1e-36 AT5G60960 639 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017862 [exp] 139 / 1e-35 AT5G60960 645 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 129 / 9e-32 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 129 / 1e-31 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 119 / 8e-29 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 117 / 2e-27 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 115 / 2e-27 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068400 [exp] 603 / 0 AT5G61370 580 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G133400 [exp] 152 / 3e-40 AT5G60960 637 / 0.0 PPR protein localized to the nucleus and mitochondria 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G038300 [exp] 137 / 9e-35 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 134 / 2e-33 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050500 [exp] 133 / 3e-33 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 132 / 5e-33 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 131 / 2e-32 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 129 / 8e-32 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 127 / 2e-31 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G149800 [exp] 127 / 4e-31 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021630 pacid=23180260 polypeptide=Lus10021630 locus=Lus10021630.g ID=Lus10021630.BGIv1.0 annot-version=v1.0 ATGCATTGCTTGGTGAGGTGTAGATGGCTTGGCTTTGTGTCGCAAAACACAGCTACTAAGTGTGTCTTCCGCGATTTCTGTTCCACCGCGTCTCAGGATC AAGTTCTTGTAGACTTGAGAGAGGTCTGCAGAGTCGTGTCTAGCTCCATTGGCGGTTTAGATGACTTGGAATGTAGTCTGAATCGTTTTACCATCAAGTT ATCGTCTTCGATAGTCAGAAAAATCATAGATTATTGTAAAGACGAGGCATCCACAAGGAGGTTGTTGAGATTCTTCCTGTGGTCGAGTAGAAATTTCAAT GCGAAAGATGAGGACTTCAATCAAATTCTTCGAGTAATGGCAGACAAAAAGGATCATAAAGCAGTCGAGATTCTGATATCGGACATGAGGAAACAGGGTC GAGTGATGGAAGCACAGACTTTCATTGCTGTTGCTGAGGCATTGGTTAAACTTGGAAGAGAAGATGAAGCATTGGGTTTGTTTAAGAACTTGGAGAAGTT CAAATGCCCACAAGATAGTGTAACTGTGAGTGCCATTGTAACATCGCTCTGCTCCAAAGGGCATGCTAAGAAAGCACAAGGAGTTGTTTGGCATCACAAG GACAAGATTTCTGGTACGATGCCGTGCATTTATCGAAGTCTTGTACATGGATGGTCAGTGCAGGAGAACGCAAAGGAAGCGCGAAAGGTTATCAAAGAGA TGAAGGGAGATGGGGTAAGTCCTGATTTGTTTTGTTTCAATGCGCTGATCAGATGCTTATCCGAGAATAATGCCAAAGAAAATCCTTCTGGACTAGTTCC TGACGCTTTGAATGTGATGATGGAAATGAAAACGCATTGCATTCAGCCAAACTCAATTAGCTACAATATCTTGCTTTCTTGCCTTGGGAGGGCAAGGAGG GTTAAGGAATCCGTTAAAATACTTGAATTGATGAAGAGATCAGGCTGTGCTCCTGATTGGCATAGCTATTATCTGGTTGTGAAAGTAATGTATTTGACTG GAAGATTTGGTAAAGGTAATCAGCTGGTGGATGAAATGTTTGTGGAAGGATTGGTACCCGATCGCAAGTTTTACAACGATTTGATTGGCGTTCTATGTGG AGTTGAAAGACTGAATTTTGCTCTAGAGGTGTTCGAACGAATGAAGAGAAGTTCGTTGAGTGGGTATGGCCCAGTGTATGATGTACTAATCCCAAAGCTT TGTAGGGGAGGGGACTTTGAAAAGGGTAGAGAACTATGGGACGAGGCTGTGAATTCGGGAGTGAGTCTTTTGTGCTCAGAAGATGTTCTGGATCCTTCAA TTACTCAAGTTTTCATCCCAAAGAGGAATGAGCAGGAATTGGTCATCCTTGCGGGTTGCACACCCCGCCGGAAGCCTGACCAGCTGAAGAAGTTTAGTGC AGCAAGGAAATCCAGAAAGGAGCCGGAAAAGACGGGAAAAAGCATGAAGAAAGCCAAGAAGTAG
AA sequence Show only first row Show all	>Lus10021630 pacid=23180260 polypeptide=Lus10021630 locus=Lus10021630.g ID=Lus10021630.BGIv1.0 annot-version=v1.0 MHCLVRCRWLGFVSQNTATKCVFRDFCSTASQDQVLVDLREVCRVVSSSIGGLDDLECSLNRFTIKLSSSIVRKIIDYCKDEASTRRLLRFFLWSSRNFN AKDEDFNQILRVMADKKDHKAVEILISDMRKQGRVMEAQTFIAVAEALVKLGREDEALGLFKNLEKFKCPQDSVTVSAIVTSLCSKGHAKKAQGVVWHHK DKISGTMPCIYRSLVHGWSVQENAKEARKVIKEMKGDGVSPDLFCFNALIRCLSENNAKENPSGLVPDALNVMMEMKTHCIQPNSISYNILLSCLGRARR VKESVKILELMKRSGCAPDWHSYYLVVKVMYLTGRFGKGNQLVDEMFVEGLVPDRKFYNDLIGVLCGVERLNFALEVFERMKRSSLSGYGPVYDVLIPKL CRGGDFEKGRELWDEAVNSGVSLLCSEDVLDPSITQVFIPKRNEQELVILAGCTPRRKPDQLKKFSAARKSRKEPEKTGKSMKKAKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10021630 [exp]	0	1
AT5G61370			Pentatricopeptide repeat (PPR)...		Lus10000207 [exp]	1.0	0.9921
AT1G76280			Tetratricopeptide repeat (TPR)...		Lus10001597 [exp]	11.3	0.6194
					Lus10027352 [exp]	20.7	0.6303
AT4G05440		EDA35	embryo sac development arrest ...		Lus10006898 [exp]	34.6	0.5698
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Lus10034010 [exp]	44.0	0.5803
AT3G06790			plastid developmental protein ...		Lus10037488 [exp]	49.7	0.6191
AT1G48170			unknown protein		Lus10022783 [exp]	54.7	0.6159
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10003689 [exp]	55.9	0.5907
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	57.3	0.6072
AT4G00525			unknown protein		Lus10037852 [exp]	62.0	0.5858

Compare expression of checked genes

Lus10021630 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.