Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07720 760 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT1G74380 749 / 0 XXT5 xyloglucan xylosyltransferase 5 (.1) AT1G18690 655 / 0 Galactosyl transferase GMA12/MNN10 family protein (.1) AT3G62720 529 / 0 ATXT1, XXT1 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) AT4G02500 525 / 0 ATXT2, XXT2 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) AT2G22900 317 / 6e-104 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G37690 316 / 1e-103 Galactosyl transferase GMA12/MNN10 family protein (.1) AT4G38310 104 / 1e-26 Galactosyl transferase GMA12/MNN10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000563 [exp] 926 / 0 AT5G07720 759 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10019076 [exp] 808 / 0 AT5G07720 744 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10015721 [exp] 805 / 0 AT5G07720 741 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037516 [exp] 535 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037519 [exp] 534 / 0 AT4G02500 786 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10002870 [exp] 529 / 0 AT4G02500 779 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Lus10037514 [exp] 421 / 4e-145 AT3G62720 615 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Lus10011550 [exp] 330 / 1e-108 AT2G22900 571 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Lus10037520 [exp] 319 / 6e-108 AT4G02500 449 / 3e-159 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061800 [exp] 799 / 0 AT5G07720 730 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.012G068300 [exp] 771 / 0 AT5G07720 755 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.008G208000 [exp] 537 / 0 AT4G02500 773 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025300 [exp] 530 / 0 AT4G02500 775 / 0.0 XYG XYLOSYLTRANSFERASE 2, ARABIDOPSIS THALIANA UDP-XYLOSYLTRANSFERASE 2, UDP-xylosyltransferase 2 (.1) Potri.010G025100 [exp] 506 / 3e-178 AT3G62720 674 / 0.0 XYG XYLOSYLTRANSFERASE 1, xylosyltransferase 1 (.1.2) Potri.014G006100 [exp] 313 / 2e-102 AT2G22900 592 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1) Potri.007G005900 [exp] 311 / 1e-101 AT2G22900 593 / 0.0 Galactosyl transferase GMA12/MNN10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF05637 [flax] [poplar] Glyco_transf_34 galactosyl transferase GMA12/MNN10 family
Representative CDS sequence Show only first row Show all	>Lus10021631 pacid=23180340 polypeptide=Lus10021631 locus=Lus10021631.g ID=Lus10021631.BGIv1.0 annot-version=v1.0 ATGGGCCAAGACAACAACAGCAGCACCTTCATTCCCCAGAAGCGATCCAGCGGCGGCGGAGCTGGAGCTGGCTCAGCCTTACCCACCACCGCCAACGGCA GAGCAGCAGGAGTTAGGACGATGATCCCACGTGGCAGGCAGATCCACAAGACCTTCAACAACATCAAGATCACTATCCTCTGCGGCTTCGTCACTATCCT CGTCCTCCGCGGCACCATCGGCATCGGCAACCTCTCCAGCTCCGAAGCCGACGCTGTCAACCAGAACATCATCGAGGAAACCAACCGGATCCTCGCCGAG ATCCGCTCCGACAAGGACCCGACCGATCCAACCTCCGACGAAGAACCTGAATTCCTCTCCTCCAATGCCACCTACTCTCTGGGACCTAAAATCGTCGATT GGGATAGTCAGCGTAAGGTATGGCTGTCTGAAAACCCCGAATTCCCCAATTCCGTCAATGGGAAAGCTAGGATTTTGCTGCTAACCGGATCCCCGCCGAA CCCTTGTGACAACCCGATTGGGGATCATTACTTGTTGAAAGCAGTCAAGAACAAGATTGATTACTGTAGGATTCATGGGATTGAGATTGTTTACAATATG GCTCATTTGGATAAGGAGCTAGCAGGTTACTGGGCGAAATTGCCCATGATTAGGAGGCTGATGCTTTCTCATCCTGAGGTGGAGTGGATTTGGTGGATGG ACAGTGATGCAATGTTCACTGATATGGTGTTTGAGATTCCTTTGGCTAAGTATGCTGAACATAATTTGGTGATCCACGGCTACCCGGACTTGCTCTTCGA GCAGAAGTCATGGATTGCGCTGAACACCGGTAGTTTCCTGTTTCGAAACTGCCAATGGAGTCTTGATTTGCTTGATACTTGGGCTCCCATGGGTCCTAAG GGACCAATTCGAGAGGATGCTGGGAAGGTACTTACTGCTAACTTGAAAGGGAGGCCGGCATTTGAAGCTGACGATCAGTCTGCGTTGATCTATTTGTTGT TGTCTCAGAAAGAGATTTGGATGGAGAAAGTGTATGTGGAGAATCAGTATTACTTGCATGGGTACTGGTTGGGATTGGTGGATCGGTACGAGGAGATGAT GGAGAAGTATCATCCCGGGTTGGGAGACGAGAGGTGGCCTTTCGTCACTCATTTCGTGGGGTGCAAGCCTTGTGGGAGCTACGGGGATTATCCGGTGGAG CAGTGCTTGAAGAGTATGGAGAGGGCTTTCAATTTTGCCGACAATCAAGTGCTTAAGTTTTACGGGTTCGGACACAGAGGGCTGTTGAGCCCCAAGATCA AGAGGATTATTAACGATACTGCAACTCCGTTGGAATATGTAGACCAAGTTGATATTCGTCGCCCACTTCATGGGAAGAAGGAGAGCTTATCTAGTGAAAC AAAGAGCTAG
AA sequence Show only first row Show all	>Lus10021631 pacid=23180340 polypeptide=Lus10021631 locus=Lus10021631.g ID=Lus10021631.BGIv1.0 annot-version=v1.0 MGQDNNSSTFIPQKRSSGGGAGAGSALPTTANGRAAGVRTMIPRGRQIHKTFNNIKITILCGFVTILVLRGTIGIGNLSSSEADAVNQNIIEETNRILAE IRSDKDPTDPTSDEEPEFLSSNATYSLGPKIVDWDSQRKVWLSENPEFPNSVNGKARILLLTGSPPNPCDNPIGDHYLLKAVKNKIDYCRIHGIEIVYNM AHLDKELAGYWAKLPMIRRLMLSHPEVEWIWWMDSDAMFTDMVFEIPLAKYAEHNLVIHGYPDLLFEQKSWIALNTGSFLFRNCQWSLDLLDTWAPMGPK GPIREDAGKVLTANLKGRPAFEADDQSALIYLLLSQKEIWMEKVYVENQYYLHGYWLGLVDRYEEMMEKYHPGLGDERWPFVTHFVGCKPCGSYGDYPVE QCLKSMERAFNFADNQVLKFYGFGHRGLLSPKIKRIINDTATPLEYVDQVDIRRPLHGKKESLSSETKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07720			Galactosyl transferase GMA12/M...		Lus10021631 [exp]	0	1
AT4G32390			Nucleotide-sugar transporter f...		Lus10002023 [exp]	1.0	0.9505
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Lus10006719 [exp]	2.4	0.9402
AT1G02816			Protein of unknown function, D...		Lus10010297 [exp]	3.9	0.9204
AT4G39840			unknown protein		Lus10041688 [exp]	4.2	0.9098
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037516 [exp]	5.5	0.9087
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10016554 [exp]	6.0	0.8938
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10020379 [exp]	6.0	0.9168
AT5G42090			Lung seven transmembrane recep...		Lus10008267 [exp]	6.0	0.9189
AT4G28230			unknown protein		Lus10031619 [exp]	6.6	0.9026
AT2G04280			unknown protein		Lus10041091 [exp]	7.5	0.8995

Compare expression of checked genes

Lus10021631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.