Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61350 929 / 0 Protein kinase superfamily protein (.1) AT4G39110 809 / 0 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 801 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 698 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT3G46290 664 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 656 / 0 Protein kinase superfamily protein (.1) AT5G24010 605 / 0 Protein kinase superfamily protein (.1) AT3G51550 557 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 557 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G28680 530 / 2e-175 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000562 [exp] 1439 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10028805 [exp] 782 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10017478 [exp] 772 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 719 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 654 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 653 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10039274 [exp] 630 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 629 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10014185 [exp] 555 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G061700 [exp] 1000 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.004G158700 [exp] 831 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.009G120400 [exp] 827 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 715 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.001G405500 [exp] 711 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 699 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.001G234200 [exp] 691 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.017G143049 [exp] 629 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.004G079700 [exp] 621 / 0 AT5G24010 1031 / 0.0 Protein kinase superfamily protein (.1) Potri.010G213200 [exp] 615 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021632 pacid=23180349 polypeptide=Lus10021632 locus=Lus10021632.g ID=Lus10021632.BGIv1.0 annot-version=v1.0 ATGGGAGGAAATACCCTTATAACCTCCCATGCCCTTCCATTTCTACACATTTTGATCATTCTACTCATCCTTATAAACTCCGTTTCTTCCATAACTGATG ACGACGACGACAGCAATAACAACAACAACAACAACACCACCAGTCCTTCTCCGTCTCCAGCTCCAGCTCCTTCGGCTCACTTTGTCCCGTACATTCCGGC TGACAATTACTTACTCAATTGCGGATCGCCCAACGACACGAATCTCGTCGATGGACGAATGTTCAAATCCGATTCTGCAACCATGGCTTACCTCCAAACC AACGACGATTTCAAAGCATCGGTCGATTCAATCCCTTCCAAACTACTCCCAAACTCCTCCGTCCCGCCTTCTTCACTTCCCTTATTTCAAAGTGCGAGAA TCTTCACTTCCGTCGCGAAATTCACCCTCCGAATCTCCAACCCCGGTAGGCATTGGGTTCGCCTCTACTTATACCCGCTCCCCCACTCTCAATGCTCACC TTCATCCTCAGTTTTCAGTGTCGCTGCCGGAGGTTCCATCCTCCTACACGAATTCTCCATGAAGCAGAACTCGTCGCCCGAGTTCAAGGAGTATCTGATT GATGTTCCGAGCGATCAGCTCACCATCACTTTCACCCCAAAATTTTCGTGCGCATTTGTCAACGCGTTGGAAGTCGTCTCTGCTCCCAACAACTTGATCT CGGATGAAGCATCTGAGATCCCCACCGGCACTTTTGCCGGTCTTTCCAAGTTTTCCCTTCAGGTTTCTCACAGGTTGAACATTGGTGGGCCCATCATAAC TCCTGAAAACGACACACTGTCAAGAACATGGATTCCTGACACGTTGTACAATGTTTTCCCTCAAGGAGCTAGGAATGTCTCTGTTTCCCCTGACATCATC AGCTTCCCTGAATCAGGAGGAGCTAATCCATACATCGCTCCAAGAACTGTCTACTCCACGGCCGAGCAAATGGCCGATTCGGAAACCTCGACGCAGAACT TCAACCTCACCTGGAAGCTACCTGTCGACCCGGGTTTCTCTTACCTGATTAGGCTCCATTTCTGTGACATTGTCAGCAAGTCTCTCGACGACTTGTATTT CAACGTCTACATCAATGAATTCGTGGGGGACGGCCCAATCGACCTTTCTTCGGTCGATCGCGCCCTGGACACAGCGTATTACAAGGATTTCGTGGTGGGT CATGGTTCAATTGACAACGGTTCGATCATGGTTCAGGTTGGTCCGGACGTTGAAACGCGATCGGGCCAAATCAACGCGATACTCAACGGTTTGGAGGTGA TAAAGATGAGCCATTGGGACGGAAGCCTAGACGGCATTGTTGGGGTTAGCGGGTTGATCGGAAGAGATGTAGCGTGGAAGATTATTGCTGGTATTGGATT GGGAATTGCTGTGACAGGGTTGCTTTTGATCGGATTGATTATGTTGAGATGGGAGAAAAGGCCTAAAGGTTGGGAGAAGAAGAAAAGCTTCTCGTCCTGG CTGCTTCCTTTGCATCGAAGAAGCAGCCAGTTCTCGATTTCCAGCTCGAAGAAATCAAGCATCTTCAGCACGAATTCCGGGCTCGGGAAGTTCTTCAGCT TTTCCGAGTTGCAAACAGCAACTCAGAATTTCGAAGAAACCGCAATCCTCGGGGTTGGAGGATTCGGGAAAGTTTACCTTGGAGTGCTCGAAGACGGGAC CAAAGTCGCGATCAAACGAGGAACACCGGGATCAGCACAGGGCATGAACGAGTTCCAGACCGAGATACAGTTGCTCTCAAAACTAAGACACCGCCACCTC GTTTCGCTCATCGGGTTTTCGGACGAGCAGTCCGAAATGATCCTGGTATACGAGTACATGTCCAATGGTCCGCTCCGCGACCACCTCTACGGGAAGGCGA AACAGGGGACTCTGTCTTGGAAACAACGTTTGGAGATATGCATCGGCTCGGCCAGAGGTCTGCATTATCTCCACACGGGATCTTCCGAAGCGATTATCCA CCGCGACGTCAAAACCACCAACATTCTCTTGGACGAGAATTTGGTGGCAAAAGTGGCCGATTTCGGCCTGTCTAAGGCCGCTCCGATGGACAGGAGTCCA GTGAGCACGGCTGTGAAAGGTAGCTTCGGGTATCTCGATCCGGAGTACTTCAGGAGGCAGCAGCTGACTGATAAGTCAGATGTGTACTCGTTCGGAGTGC TTTTATTCGAGGTGTTGTGCGCTAGGCCGGTTCTGAATCCGATCTTGCCGAGGGAGGAAGTGAACTTAGGGGAGTGGGCTATGAGTTGCTACAGGAGGGG GACATTGGAGAAGATAATTGATCCGGAGATTAAAGGGAGTATAGATAAAGAGTCGTTGAATAAATTTGTGGAAGCTGCGGAGAAGTGTTTGTCAGAGTAT GGGGTGGATAGGCCGGCGATGGGAGATGTGCTGTGGAACTTGGAGTATGCATTGCAGTTGCAGAATGCTTCTTCTTCTTCTTCTTCTTCTTCCGTGAAAA AGAAGAGCGAAGAGAATGATGATGAAGCAAATTTGATTGGTTGTGTTGGGAAGAAGATGGAAGAAAGTGGTGGTGGTGGTGGTGTGGTGGATGATGATTC TCAAGTGATTGGTGGAATCTCTACTATCATTCCGAATTTCGGGGAGATGGAAGGAAGGTGA
AA sequence Show only first row Show all	>Lus10021632 pacid=23180349 polypeptide=Lus10021632 locus=Lus10021632.g ID=Lus10021632.BGIv1.0 annot-version=v1.0 MGGNTLITSHALPFLHILIILLILINSVSSITDDDDDSNNNNNNNTTSPSPSPAPAPSAHFVPYIPADNYLLNCGSPNDTNLVDGRMFKSDSATMAYLQT NDDFKASVDSIPSKLLPNSSVPPSSLPLFQSARIFTSVAKFTLRISNPGRHWVRLYLYPLPHSQCSPSSSVFSVAAGGSILLHEFSMKQNSSPEFKEYLI DVPSDQLTITFTPKFSCAFVNALEVVSAPNNLISDEASEIPTGTFAGLSKFSLQVSHRLNIGGPIITPENDTLSRTWIPDTLYNVFPQGARNVSVSPDII SFPESGGANPYIAPRTVYSTAEQMADSETSTQNFNLTWKLPVDPGFSYLIRLHFCDIVSKSLDDLYFNVYINEFVGDGPIDLSSVDRALDTAYYKDFVVG HGSIDNGSIMVQVGPDVETRSGQINAILNGLEVIKMSHWDGSLDGIVGVSGLIGRDVAWKIIAGIGLGIAVTGLLLIGLIMLRWEKRPKGWEKKKSFSSW LLPLHRRSSQFSISSSKKSSIFSTNSGLGKFFSFSELQTATQNFEETAILGVGGFGKVYLGVLEDGTKVAIKRGTPGSAQGMNEFQTEIQLLSKLRHRHL VSLIGFSDEQSEMILVYEYMSNGPLRDHLYGKAKQGTLSWKQRLEICIGSARGLHYLHTGSSEAIIHRDVKTTNILLDENLVAKVADFGLSKAAPMDRSP VSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVLLFEVLCARPVLNPILPREEVNLGEWAMSCYRRGTLEKIIDPEIKGSIDKESLNKFVEAAEKCLSEY GVDRPAMGDVLWNLEYALQLQNASSSSSSSSVKKKSEENDDEANLIGCVGKKMEESGGGGGVVDDDSQVIGGISTIIPNFGEMEGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61350			Protein kinase superfamily pro...		Lus10021632 [exp]	0	1
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10032391 [exp]	2.0	0.8824
AT3G52930			Aldolase superfamily protein (...		Lus10027717 [exp]	2.8	0.8579
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10001419 [exp]	3.6	0.8860
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024062 [exp]	7.5	0.7644
AT4G12320		CYP706A6	"cytochrome P450, family 706, ...		Lus10024586 [exp]	8.5	0.8789
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	11.7	0.8669
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10027189 [exp]	13.4	0.7025
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10024422 [exp]	13.4	0.8656
AT1G33260			Protein kinase superfamily pro...		Lus10019741 [exp]	17.2	0.7857
AT3G53620		ATPPA4	pyrophosphorylase 4 (.1)		Lus10025311 [exp]	18.8	0.8388

Compare expression of checked genes

Lus10021632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.