Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07910 305 / 4e-105 Leucine-rich repeat (LRR) family protein (.1) AT2G30105 127 / 1e-34 unknown protein AT2G17440 76 / 2e-15 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT4G35470 72 / 4e-14 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT3G15410 63 / 4e-11 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT3G26500 61 / 2e-10 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT2G19330 58 / 2e-09 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT5G05850 57 / 4e-09 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT3G24240 56 / 1e-08 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G12970 55 / 2e-08 PIRL3 plant intracellular ras group-related LRR 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000681 [exp] 410 / 3e-146 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1) Lus10031861 [exp] 129 / 4e-35 AT2G30105 437 / 7e-154 unknown protein Lus10031291 [exp] 129 / 5e-35 AT2G30105 444 / 2e-156 unknown protein Lus10035976 [exp] 89 / 6e-20 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10016684 [exp] 89 / 1e-19 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 72 / 6e-14 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10011756 [exp] 63 / 6e-11 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10017948 [exp] 59 / 1e-09 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10013689 [exp] 58 / 2e-09 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G048800 [exp] 353 / 4e-124 AT5G07910 341 / 2e-119 Leucine-rich repeat (LRR) family protein (.1) Potri.001G280500 [exp] 124 / 3e-33 AT2G30105 503 / 1e-179 unknown protein Potri.007G065000 [exp] 92 / 5e-21 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 92 / 5e-21 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 75 / 3e-15 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.001G144100 [exp] 69 / 3e-13 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.010G046500 [exp] 64 / 2e-11 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.012G085600 [exp] 60 / 4e-10 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.011G072916 [exp] 58 / 7e-10 AT1G29740 251 / 2e-76 Leucine-rich repeat transmembrane protein kinase (.1) Potri.015G083800 [exp] 59 / 8e-10 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10021635 pacid=23180332 polypeptide=Lus10021635 locus=Lus10021635.g ID=Lus10021635.BGIv1.0 annot-version=v1.0 ATGGGTTGCTACGCAAGCAAAAACGTCGACACCAAAGCAGCCAGGACTGCTCGCTGGCGATCTACCGGCATTGTTGCCTTGCGTGACTCTAGATTGAAGA CCTTCCCGAATGACATTCTAGATCTTGAGAGAGCTGTGCGAACCCTTGATTTGACACACAACAAAATAGTTGATGTCCCAACGGAGATTAGCAAATTAAT TAACATGCAGCGCCTGATCTTGGCAAACAACTTGATTCAGCGGCTACCAGTGAACTTAGGAAAACTGCAGTCATTGAAGGTTATGACACTTGATGGAAAC CAGCTTTCTCTCTTGCCTGATGAATTGGGCCAGCTGGTAAGGCTTGAGCGTTTATCCATTACAGGAAATTTGTTATCGAGTTTGCCGGATACAATTGGAA GCTTGCGCAATTTGTCCCTTTTAAATGTCTCCAACAACAAGTTGAAGACTCTTCCGGAATCAATTGGGAGTTGCTTCTCTTTGGAGGAACTTGAGGCAAA TGAGAATCTCATTGAGGGTCTTCCTGCATCCATCTGCAACCTCGTGCACTTGAAGTCACTTAGCCTGAACAAGAACACTATAAATCAGATTCCTCCAAAT CTATTGAAAGACTGCAAGGCTCTGCAGAATATATCTCTGCATGAGAATCCTATCTCAATGGATCAGTTTCAGCAGATGGAAGGATTTCAAGAATTTGAAG CGAGAAGGAAGAGGAAATTTGACAAACAAATCGAATCTAACGTGATGATCAGTTCGAAGGGCCTTGACGAGGGTGTGGACTTGTGA
AA sequence Show only first row Show all	>Lus10021635 pacid=23180332 polypeptide=Lus10021635 locus=Lus10021635.g ID=Lus10021635.BGIv1.0 annot-version=v1.0 MGCYASKNVDTKAARTARWRSTGIVALRDSRLKTFPNDILDLERAVRTLDLTHNKIVDVPTEISKLINMQRLILANNLIQRLPVNLGKLQSLKVMTLDGN QLSLLPDELGQLVRLERLSITGNLLSSLPDTIGSLRNLSLLNVSNNKLKTLPESIGSCFSLEELEANENLIEGLPASICNLVHLKSLSLNKNTINQIPPN LLKDCKALQNISLHENPISMDQFQQMEGFQEFEARRKRKFDKQIESNVMISSKGLDEGVDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10021635 [exp]	0	1
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	2.4	0.8720
AT1G17350			NADH:ubiquinone oxidoreductase...		Lus10027384 [exp]	8.6	0.8553
AT4G31150			endonuclease V family protein ...		Lus10024534 [exp]	16.1	0.8257
					Lus10037282 [exp]	17.4	0.8161
AT3G16380		PAB6	poly(A) binding protein 6 (.1)		Lus10038840 [exp]	18.0	0.8374
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	19.6	0.8485
					Lus10027225 [exp]	20.2	0.7904
AT3G47610			transcription regulators;zinc ...		Lus10024226 [exp]	23.2	0.7629
AT3G57000			nucleolar essential protein-re...		Lus10007483 [exp]	25.1	0.7924
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	26.8	0.8338

Compare expression of checked genes

Lus10021635 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.