Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45120 90 / 1e-19 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 84 / 1e-17 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G03510 79 / 3e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT1G02040 76 / 6e-15 C2H2ZnF C2H2-type zinc finger family protein (.1) AT4G35280 71 / 2e-13 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT3G19580 71 / 2e-13 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G49930 69 / 3e-13 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28200 69 / 7e-13 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G17180 66 / 6e-12 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT5G04390 67 / 8e-12 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000679 [exp] 578 / 0 AT2G45120 91 / 3e-20 C2H2-like zinc finger protein (.1) Lus10015740 [exp] 120 / 5e-30 AT1G02030 104 / 3e-25 C2H2-like zinc finger protein (.1) Lus10003463 [exp] 117 / 6e-29 AT1G26610 112 / 2e-28 C2H2-like zinc finger protein (.1) Lus10024763 [exp] 89 / 1e-18 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 89 / 1e-18 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10028173 [exp] 85 / 2e-17 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 84 / 6e-17 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 80 / 1e-16 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10032848 [exp] 73 / 3e-14 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G143800 [exp] 92 / 5e-20 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.014G066100 [exp] 87 / 2e-18 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.014G066200 [exp] 85 / 2e-17 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143600 [exp] 85 / 2e-17 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.009G166200 [exp] 80 / 3e-16 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.004G216900 [exp] 78 / 1e-15 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.004G205300 [exp] 77 / 4e-15 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.009G004800 [exp] 75 / 1e-14 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 74 / 3e-14 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 72 / 7e-14 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021637 pacid=23180333 polypeptide=Lus10021637 locus=Lus10021637.g ID=Lus10021637.BGIv1.0 annot-version=v1.0 ATGGAGGAAGATTATCAGCTACAGCTACAGCAGCAGCAGAAGATGAAACATGTGTGCAAATTCTGTAGGAAGAGCTTCCCATGTGGGAGGTCACTGGGGG GACACATGAGGTCACATATGATCAATGATGTCTCAGCTCAAACTGATGGCACTCTCATCACCAGAAAGAAGCTCCCTTCTCTCATCATCACTACTTCCCC ACCACCACCCCATCATAATGCTGATTCTGCTGCTCAAGTTGTTGTTGAGAAACTGTGCAAGGAGTGTGGCAAGGGAGGTTTCCAGTCATGGAAGGCCTTG TTTGACCACATGAAGTTCCACCATTCCTCCTTTGATCAGAAGGCAAAAGAGGAAGACGAATTGGAAGATGAGGATGAAGATGAGGATTCTTGGGAGAATA GTGGTAGCAATATGAAACAGAACATGGTGATCATGGACAGCAGCCAATCTGACAATGAGATCATGACTGGGATTTCGATGCCTAATCGGAGGAAGAGATC GATTAATAAGAGGCGATCGGCTGCTAATTCTTCATCATTCTCAGCTGTTTCTGGGGTTGAAGAACAAGAACAAGAAGAGGTTGCTTTGTGCCTCATGTTG CTCTCTAGAGATGTCACCAACTGGGGTTCTAATTCTGCTCATAAAGATCATAATGGTACTATTGCTGCTGCTGAGTCATCTGATAACAACTATGTTTTGT CCGAATCTCCTCCCAACAGGCTGGATCAGGAAGAACTAGTAAAAGGTACTATTGTTGTTGTTATGAAATCTGAAATTTCTGTGTCTGAGAATCCAAGAAA AGGTGGTGATGTTGTTAAGAGGAAAAGAAAGCTGAAAGAATGTGAAGATCAATCCATGGAAGTTTGCAAGGATGACAACATCAAGTTTGAGTGCAACACT TGCAACAAGAGCTTCCATTCATATCAGGCATTGGGAGGGCATAGAGCTAGCCACAAGAAGACTAAAGGCTGTTTTGCTTCCATAATTGATGAGACCAACA ATGCAGACGAAGAAGAAGAAGATACTGATCAGAAGATGATCATGATGAAATCAGTCAACAATGAAATTCTTGACAACAAGTCCCCTACTCCTCCATCTCC TCCAGTTTCGGCGAATCGAAATGTCGCAAGTGGATCTCTGGGAAGGAAAAGGGATGTGAACAAAAGTCATCAGTGTCCCATTTGTCTCAAAGTGTTTCCC TCAGGACAGGCACTTGGTGGCCACAAGAGGTCTCACTTGGTTGCAACCAATAACAGTAAAGTTGCAGTATTGCCTACTGCAGAAGTAGTAGTACCAGCTG CAGAAGCAGCAAAGATTCCAGTCATTAAAGATTTCTTGGATCTCAATCTTCCTGCCCCAGTTGATGAAGAAAGTACCAACAACAACAGTAGCATTAATTT GGGGTTCAATCAATGGTGGGCTGGAACAGCCACAAACATGAACAACAACAACAACAACCACTTGTGGGTTTGA
AA sequence Show only first row Show all	>Lus10021637 pacid=23180333 polypeptide=Lus10021637 locus=Lus10021637.g ID=Lus10021637.BGIv1.0 annot-version=v1.0 MEEDYQLQLQQQQKMKHVCKFCRKSFPCGRSLGGHMRSHMINDVSAQTDGTLITRKKLPSLIITTSPPPPHHNADSAAQVVVEKLCKECGKGGFQSWKAL FDHMKFHHSSFDQKAKEEDELEDEDEDEDSWENSGSNMKQNMVIMDSSQSDNEIMTGISMPNRRKRSINKRRSAANSSSFSAVSGVEEQEQEEVALCLML LSRDVTNWGSNSAHKDHNGTIAAAESSDNNYVLSESPPNRLDQEELVKGTIVVVMKSEISVSENPRKGGDVVKRKRKLKECEDQSMEVCKDDNIKFECNT CNKSFHSYQALGGHRASHKKTKGCFASIIDETNNADEEEEDTDQKMIMMKSVNNEILDNKSPTPPSPPVSANRNVASGSLGRKRDVNKSHQCPICLKVFP SGQALGGHKRSHLVATNNSKVAVLPTAEVVVPAAEAAKIPVIKDFLDLNLPAPVDEESTNNNSSINLGFNQWWAGTATNMNNNNNNHLWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10021637 [exp]	0	1
AT1G29200			O-fucosyltransferase family pr...		Lus10007290 [exp]	1.7	0.9339
AT2G33990		IQD9	IQ-domain 9 (.1)		Lus10015300 [exp]	2.4	0.9224
AT1G29200			O-fucosyltransferase family pr...		Lus10029239 [exp]	3.2	0.9338
AT3G59110			Protein kinase superfamily pro...		Lus10001055 [exp]	4.5	0.9188
AT2G45120	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10000679 [exp]	5.5	0.8981
AT1G28240			Protein of unknown function (D...		Lus10015438 [exp]	6.0	0.8813
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10015212 [exp]	10.1	0.9117
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Lus10003544 [exp]	10.2	0.9120
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	11.0	0.8839
AT2G42320			nucleolar protein gar2-related...		Lus10011304 [exp]	14.7	0.8767

Compare expression of checked genes

Lus10021637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.