Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23730 413 / 6e-147 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT4G14130 407 / 1e-144 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) AT4G25810 372 / 1e-130 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 371 / 3e-130 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57560 363 / 4e-127 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT4G30270 359 / 5e-126 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT5G57530 353 / 4e-123 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT5G57540 351 / 2e-122 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT2G18800 338 / 8e-117 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT4G25820 335 / 3e-116 ATXTH14, XTR9, XTH14 xyloglucan endotransglycosylase 9, xyloglucan endotransglucosylase/hydrolase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000678 [exp] 557 / 0 AT3G23730 410 / 6e-146 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10028947 [exp] 416 / 7e-148 AT4G14130 437 / 2e-156 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10008522 [exp] 410 / 2e-145 AT3G23730 430 / 2e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10004723 [exp] 403 / 7e-143 AT3G23730 431 / 1e-153 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010938 [exp] 376 / 3e-132 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10010939 [exp] 375 / 7e-132 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 374 / 2e-131 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020773 [exp] 374 / 3e-131 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 372 / 9e-131 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G146100 [exp] 428 / 6e-153 AT3G23730 451 / 1e-161 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G236200 [exp] 415 / 1e-147 AT3G23730 436 / 1e-155 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.005G201200 [exp] 408 / 9e-145 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.005G201250 [exp] 405 / 7e-144 AT4G14130 395 / 2e-139 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.002G060500 [exp] 405 / 1e-143 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.011G077320 [exp] 389 / 3e-137 AT3G23730 386 / 7e-136 xyloglucan endotransglucosylase/hydrolase 16 (.1) Potri.002G060400 [exp] 386 / 4e-136 AT4G14130 402 / 2e-142 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.013G005700 [exp] 386 / 2e-135 AT4G25810 431 / 5e-153 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095100 [exp] 382 / 1e-134 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 379 / 3e-133 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10021638 pacid=23180347 polypeptide=Lus10021638 locus=Lus10021638.g ID=Lus10021638.BGIv1.0 annot-version=v1.0 ATGGGTTTCTACTCTAGTCCATTTGGGGTACTAGTAGTGGGACTTGTGATCAGTTCTTGTATGGCAGGAGTTGCACTTGCGGGCAATTTCGACCAGGATT TCGACTTAACATGGGGAGGGCCACGAGCTAAGATCTCAAATGGTGGTCGGGATTTGTCTCTGTCGCTAGACAATACCTCTGGCTCTGGATTTCAGTCCAA GAAGGAGTACCTCTTTGGCAAGATAGACATGCAGCTTAAGCTCATCGCTGGCAACTCTGCCGGCACTGTCACTACTTACTACTTGTCATCTGAAGGGACT ACACATGACGAAATCGACTTCGAATTTCTAGGAAACCTGAGCGGAGACCCGTACATTATCCACACCAACGTATTTAGCCAAGGCAAAGGAAACAGAGAGC AACAATTCTACTTATGGTTCGACCCGACACAAGACTACCATACTTACTCTGTCATATGGCTCCCACACCACATCGTGTTCTTGGTGGACAATACTCCTAT TAGGGTTTTCAAAAACTCTGAGGCCATGGGAGTACCTTTCCCCAAAAGCCAGCCCATGAAGATCCACTCAAGCCTGTGGAATGCAGATGATTGGGCTACC CGTGGAGGGCTGGTCAAGACCGATTGGTCGAAGGCTCCGTTCACAGCCTACTATCGTAACTTCAATTCTCTTGAGGTTTCGAAAATGGTGTCACCGAAAT CATTTTCGGATGGGAATTGGGAGTCGAAGGAGTTGGACGACAAGGCAAGGAGGAGAGTGAGGTGGGTACAGAAGAACTACATGATTTACAACTATTGCAC AGACCTTAAGCGCTTCCCCCAAGGTTTTCCTGTGGAGTGTCGATCATGA
AA sequence Show only first row Show all	>Lus10021638 pacid=23180347 polypeptide=Lus10021638 locus=Lus10021638.g ID=Lus10021638.BGIv1.0 annot-version=v1.0 MGFYSSPFGVLVVGLVISSCMAGVALAGNFDQDFDLTWGGPRAKISNGGRDLSLSLDNTSGSGFQSKKEYLFGKIDMQLKLIAGNSAGTVTTYYLSSEGT THDEIDFEFLGNLSGDPYIIHTNVFSQGKGNREQQFYLWFDPTQDYHTYSVIWLPHHIVFLVDNTPIRVFKNSEAMGVPFPKSQPMKIHSSLWNADDWAT RGGLVKTDWSKAPFTAYYRNFNSLEVSKMVSPKSFSDGNWESKELDDKARRRVRWVQKNYMIYNYCTDLKRFPQGFPVECRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Lus10021638 [exp]	0	1
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10020511 [exp]	5.2	0.7320
AT5G03100			F-box/RNI-like superfamily pro...		Lus10029952 [exp]	7.7	0.7043
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Lus10015608 [exp]	8.8	0.7016
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10022104 [exp]	9.2	0.6995
AT1G60830			RNA-binding (RRM/RBD/RNP motif...		Lus10011201 [exp]	10.1	0.6866
					Lus10021381 [exp]	11.4	0.6940
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	16.1	0.6844
AT1G18330	MYB	RVE7, EPR1	REVEILLE 7, EARLY-PHYTOCHROME-...		Lus10026365 [exp]	16.2	0.6456
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10022187 [exp]	18.3	0.6752
AT3G25610			ATPase E1-E2 type family prote...		Lus10017901 [exp]	20.8	0.5753

Compare expression of checked genes

Lus10021638 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.