Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26570 145 / 7e-43 UGD1, ATUGD1 UDP-glucose dehydrogenase 1 (.1) AT5G15490 136 / 1e-39 UGD3 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) AT3G29360 132 / 5e-38 UGD2 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) AT5G39320 129 / 5e-37 UDP-glucose 6-dehydrogenase family protein (.1) AT3G01010 119 / 8e-36 UDP-glucose/GDP-mannose dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034703 [exp] 167 / 2e-51 AT5G15490 882 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10021626 [exp] 166 / 1e-50 AT5G15490 875 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Lus10026656 [exp] 139 / 1e-40 AT1G26570 868 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10004656 [exp] 137 / 1e-39 AT1G26570 864 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10036887 [exp] 131 / 1e-39 AT3G29360 444 / 5e-157 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Lus10037096 [exp] 132 / 3e-38 AT1G26570 815 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10026657 [exp] 132 / 3e-37 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10004657 [exp] 58 / 3e-12 AT5G15490 133 / 4e-38 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118600 [exp] 142 / 5e-42 AT5G15490 879 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.010G159800 [exp] 132 / 3e-38 AT5G15490 853 / 0.0 UDP-glucose dehydrogenase 3, UDP-glucose 6-dehydrogenase family protein (.1) Potri.008G094300 [exp] 130 / 3e-37 AT3G29360 858 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2) Potri.017G092000 [exp] 129 / 6e-37 AT3G29360 898 / 0.0 UDP-glucose dehydrogenase 2, UDP-glucose 6-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF03720 [flax] [poplar] UDPG_MGDP_dh_C UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain
Representative CDS sequence Show only first row Show all	>Lus10021639 pacid=23180319 polypeptide=Lus10021639 locus=Lus10021639.g ID=Lus10021639.BGIv1.0 annot-version=v1.0 ATGAGCTGCAACTGGACAAGCGTAAAAGAACAAGTGAGCATAGTGTCGGATGCGTACGAGGCTACGAAGGATGCTCACGGTGTGTACATTCTGACCGAGT GGGATGAGTTCAAGAAACTATACTACAAAAAGATATACGACAAGATGCAAAAGCCAGCATTTGTGTTTCATGGGAGGAAGGTGGTTGATGCTGCAAAGTT GAGGGAGATTGGTTTCATTGTTTACTCCATTGGGAAGCCTTTGGATAATTGGCTCCAGGACTTGCCTGGTTTGGCTTGA
AA sequence Show only first row Show all	>Lus10021639 pacid=23180319 polypeptide=Lus10021639 locus=Lus10021639.g ID=Lus10021639.BGIv1.0 annot-version=v1.0 MSCNWTSVKEQVSIVSDAYEATKDAHGVYILTEWDEFKKLYYKKIYDKMQKPAFVFHGRKVVDAAKLREIGFIVYSIGKPLDNWLQDLPGLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10021639 [exp]	0	1
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	4.1	0.9635
					Lus10015828 [exp]	6.5	0.9613
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	8.5	0.9575
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10036117 [exp]	9.5	0.8498
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	9.8	0.9547
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	10.5	0.9537
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	12.5	0.9525
					Lus10019410 [exp]	13.7	0.9459
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	14.5	0.9507
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	14.8	0.9449

Compare expression of checked genes

Lus10021639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.