Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61340 175 / 5e-52 unknown protein AT1G26650 52 / 3e-07 unknown protein AT1G69430 50 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034727 [exp] 602 / 0 AT5G61340 193 / 4e-59 unknown protein Lus10015723 [exp] 233 / 5e-75 AT5G61340 135 / 2e-37 unknown protein Lus10003483 [exp] 211 / 3e-66 AT5G61340 153 / 2e-44 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060900 [exp] 234 / 1e-74 AT5G61340 164 / 5e-48 unknown protein Potri.012G068000 [exp] 213 / 1e-67 AT5G61340 154 / 2e-45 unknown protein Potri.004G102800 [exp] 96 / 2e-22 AT5G61340 73 / 2e-14 unknown protein Potri.008G091500 [exp] 59 / 1e-09 AT1G26650 401 / 3e-140 unknown protein Potri.010G163400 [exp] 56 / 1e-08 AT1G26650 453 / 1e-160 unknown protein Potri.006G155900 [exp] 52 / 2e-07 AT1G69430 79 / 2e-16 unknown protein Potri.006G159000 [exp] 52 / 3e-07 AT1G69430 78 / 4e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021641 pacid=23180329 polypeptide=Lus10021641 locus=Lus10021641.g ID=Lus10021641.BGIv1.0 annot-version=v1.0 ATGGCGAAACAACTCCAATCCTCCTCAGCAGGGTTAATCCTCAGAACCTCAATCCATACATTCCTCAAACACTTCCAATTCTTCACCTCCACTCCAGTCC TACTCGCATTCCCCTTTGCAGCTTCAGTCCTCCTCTCTCAGGCCGCCGCCCCGGCCGCTGCCGCCACCGGAACCCTCTTCAACCGCCTCCAATCCCTTTC TCAGGCCGCCGGATTCCCCCCTTCTTCCCAATTCCTTACTATCCTCAACTTAAAGCTCTCACAAACCATCGCTTCCTTCATCTTCACCGTACCATTCTCG CTCACTTTCCTCCTCTTCGCTAAATCCTCTGTTTTCTCCTTCCTGAAAAACAGAGCACTGAACCAACCCAACAGTAATCTCCCTCGAGAATCTGTATCTT CCATCTTCTGGCCGTTGCTTCTGACCCACGTAACCAATTCCTTCGTGCTCCTTTCGGCCAATGCATCCGCATTCTGCTTAATTGTAATCTCGTTCAATGT CTTGGAACCCTTTGACATTTCTTCCTCCCCTGTTTTTCTCCTCGTCGTCTCTGCTCTGGGAGCAGTTGTCTACTCCGTGATTCTAGCCAACGCCGTCGTG ATCTGCAACCTTGCTACGGTTATCACCGGAATGGAGCGGCGTATGGGAGGGTATATGGCGGTTTTGAAGGCGGCGGTGATGATTCGCCGGAGAGCTTCAA CGGCTCTGTCTCTGGCGCTTCCGGCCAACGTTGCGATGGCCGGAATTGAAGCTCTGTTTCAGTACAGGGTGATTGGTGGGTACTACAAATACAGTGATTG GGTTGGGGAAACGGAAACGGCGTCGGATTGGTGGTATTCTAGGAGGTTTGTGGCGATGGGTTTGGAAACGGTGCTGATTTGTTCGATGTATTCGGTGTTT GTGGTGCTTGACGCCATTGCTGGGTGCTTTTTGTACAAGAGCATCAGGGATGAGATAGTGGGGGAAGGATTAGCGATGGAGATTGGGTATTATTACGCCA AGTGGAAGGTTGATGAAGATGATGATGAAGCAGAGGATGGATTGCTGTGA
AA sequence Show only first row Show all	>Lus10021641 pacid=23180329 polypeptide=Lus10021641 locus=Lus10021641.g ID=Lus10021641.BGIv1.0 annot-version=v1.0 MAKQLQSSSAGLILRTSIHTFLKHFQFFTSTPVLLAFPFAASVLLSQAAAPAAAATGTLFNRLQSLSQAAGFPPSSQFLTILNLKLSQTIASFIFTVPFS LTFLLFAKSSVFSFLKNRALNQPNSNLPRESVSSIFWPLLLTHVTNSFVLLSANASAFCLIVISFNVLEPFDISSSPVFLLVVSALGAVVYSVILANAVV ICNLATVITGMERRMGGYMAVLKAAVMIRRRASTALSLALPANVAMAGIEALFQYRVIGGYYKYSDWVGETETASDWWYSRRFVAMGLETVLICSMYSVF VVLDAIAGCFLYKSIRDEIVGEGLAMEIGYYYAKWKVDEDDDEAEDGLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61340			unknown protein		Lus10021641 [exp]	0	1
AT5G61340			unknown protein		Lus10034727 [exp]	1.0	0.9909
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	1.4	0.9901
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10036111 [exp]	2.0	0.9816
AT5G37478			TPX2 (targeting protein for Xk...		Lus10020800 [exp]	3.0	0.9831
AT1G21510			unknown protein		Lus10028651 [exp]	3.2	0.9793
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	4.2	0.9791
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10018208 [exp]	4.9	0.9716
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10009922 [exp]	6.0	0.9758
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10024987 [exp]	7.7	0.9672
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	8.0	0.9770

Compare expression of checked genes

Lus10021641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.