Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18670 736 / 0 IBS1 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) AT1G74330 716 / 0 Protein kinase superfamily protein (.1.2) AT5G39420 575 / 0 CDC2CAT CDC2C (.1) AT1G54610 531 / 1e-178 Protein kinase superfamily protein (.1.2.3) AT1G53050 535 / 2e-178 Protein kinase superfamily protein (.1) AT3G01085 528 / 2e-176 Protein kinase superfamily protein (.1) AT1G09600 526 / 7e-175 Protein kinase superfamily protein (.1) AT1G71530 502 / 3e-166 Protein kinase superfamily protein (.1.2) AT1G33770 500 / 6e-166 Protein kinase superfamily protein (.1) AT5G44290 491 / 6e-162 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034726 [exp] 1159 / 0 AT1G18670 782 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10015727 [exp] 873 / 0 AT1G18670 884 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Lus10012805 [exp] 556 / 0 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10004144 [exp] 553 / 0 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001715 [exp] 551 / 0 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033975 [exp] 547 / 0 AT1G54610 762 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 543 / 0 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10025773 [exp] 543 / 0 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10028890 [exp] 535 / 1e-178 AT1G09600 631 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G067800 [exp] 833 / 0 AT1G18670 878 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.015G061400 [exp] 831 / 0 AT1G18670 846 / 0.0 IMPAIRED IN BABA-INDUCED STERILITY 1, Protein kinase superfamily protein (.1) Potri.017G088200 [exp] 613 / 0 AT5G39420 647 / 0.0 CDC2C (.1) Potri.005G045500 [exp] 556 / 0 AT1G54610 769 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G204400 [exp] 553 / 0 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G032200 [exp] 547 / 0 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G399700 [exp] 544 / 0 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1) Potri.015G103300 [exp] 537 / 0 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.011G119400 [exp] 541 / 2e-180 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 531 / 1e-178 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10021642 pacid=23180315 polypeptide=Lus10021642 locus=Lus10021642.g ID=Lus10021642.BGIv1.0 annot-version=v1.0 ATGGGTTGTGTCAGCTCCAAGCAGGCCGTCTCCGTCACTCCGGCTGCCCAAAACTCCGGCGGGACTAACTCGGGTCGGATACGGGTCGGCCCTGGAACGG AGGAGAAGGGCCACAAGAATGATATCAAGAAGAGTGATTTCAGCATTGGTCGCGGAGGAGAGTTGACCAAGTCGGGTCGAGGGAGCTCCAACGGGGATGT CTCGCTCAGTTTTAGGTTCAGGAATCTGCACAGGTACGTCGAAGGTGAGCAGGTCGCCGCCGGTTGGCCTGCCTGGCTTAGCGCCGTTGCCGGCGAAGCA ATTCACGGTTGGGTCCCCCTTAAAGCTGATTCCTTCCAGAAACTAGACAAGATAGGCCAAGGTACATATAGCAGCGTGTTTAGAGCAAGGGAGCTCGAGA CTGGGAGGATTGTTGCATTGAAGAAGGTCCGTTTCGACAATTTTGAGCCGGAGAGTGTGAGGTTTATGGCAAGGGAGATAGTGATTCTGCGCCGCCTTAA TCATCCCAATGTCATGAAATTGGATGGACTGATTACATCACACTCATCCAGCAGCATATACTTGGTGTTTGAGTACATGGAACATGACATTACTGGTTTA CTTTCATGCCCTGATGTTACTTTTACTGAGTCACAGATCAAGTGCTTCATGAAACAGTTGTTGTCGGGGATTGAGCACTGCCACTCCATGGGAGTAATGC ATAGGGATATTAAAGGCTCCAACCTTCTTGTAAATAACCAAGGGATACTGAAAGTTGCAGACTTTGGCCTTGCAAACTTCTGCAGCGTTGGAAATAATAG GGAGCCTCTAACAAGTCGAGTCGTCACGCTGTGGTATCGCCCACCAGAGCTTCTGCTGGGTTCGACCAGTTATGGAGCATCTGTTGATCTTTGGAGCGTT GGATGCGTGTTTGCTGAACTTCTCCGTGGGAAGCCCATCCTGCGAGGAAGAACTGAGGTTGAGCAGTTGCATAAGATTTTCAAGTTGTGTGGTTCCCCAC CTGATGAGTACTGGAAGAAGTCCAAGCTTCCTCATTCAACTCTATTCAAACCGCAACAACACTACGAAAGTTGCATTCTTGAGACATTTAAAGATATGCC AACTAGTGCAGTGAGTCTCATTGCTACTCTACTTTCTGTGGAGCATTACAAGCGTGGAACTGCTTCATCCGCTCTTTCATCCCAGTATTTCACAACTGAG CCTCATGCTTGCGAACCAGCAAGCCTGCCGAAGTACCCTCCAAGCAAAGAAATCGATGCCAAGAATCGCGAGGAAGCTACAAGGAAGAATACCAGTGGGA GGACAAACCGGGGTGCTGAAACACGAAAGCCGGTACAACGTGGCCATCGAAACACCACAAGGCGAAATATGGATTCACGAAAACCGTCCCCTAAGAAATT AGATGGCGAGTCTGTCCATGATGTCAAGAATCAGAAAGGAGACATTTCTTTCTCCGGACCTATGCAAGTCTCTACTTCCAGTGGCTTTGCTTGGGCGAGA AGGCGAAGAGAAGATGCAACTCGTGTATCCCATAACGAGTCCATTTCGAAAGTTCACGTTACTAGAGATGGACCGGAGCCTTCAGCTGCTATTGGTGAAA AGAACATGTTTGTGTCACAGCGACATGATTGTGGAGAAATTGATGGTGGGATCGGGTGTGACATGTACGATATTTCGAAGAGTTCTTTGCAGGAGAAATG GAGGGAATTTGAACGTCCAGATTCCTTTTTTGATACATCTGAGGATTACCATTCACAGGAACTGTCATTGGGTCATTACCAGAGAGAGGGACTGGAAACC AGGAGGACTAATTTGGTTGAGCAGTTGCATAAGATTTTCAAGTTGTGTGGTTCCCCACCTGATGAGTACTGGAAGAAGTCCAAGCTTCCTCATTCAACTC TATTCAAACCGCAACAACACTACGAAAGTTGCATTCTTGAGACATTTAAAGATATGCCAACTAGTGCAGTGAGTCTCATTGCTACTCTACTTTCTGTGGA GCATTACAAGCGTGGAACTGCTTCATCCGCTCTTTCATCCCAGTATTTCACAACTGAGCCTCATGCTTGCGAACCAGCAAGCCTGCCGAAGTACCCTCCA AGCAAAGAAATCGATGCCAAGAATCGCGAGGAAGCTACAAGGAAGAATACCAGTGGGAGGACAAACCGGGGTGCTGAAACACGAAAGCCGGTACAACGTG GCCATCGAAACACCACAAGGCGAAATATGGATTCACGAAAACCGTCCCCTAAGAAATTAGATGGCGAGTCTGTCCATGATGTCAAGAATCAGAAAGGAGA CATTTCTTTCTCCGGACCTATGCAAGTCTCTACTTCCAGTGGCTTTGCTTGGGCGAGAAGGCGAAGAGAAGATGCAACTCGTGTATCCCATAACGAGTCC ATTTCGAAAGTTCACGTTACTAGAGATGGACCGGAGCCTTCAGCTGCTATTGGTGAAAAGAACATGTTTGTGTCACAGCGACATGATTGTGGAGAAATTG ATGGTGGGATCGGGTGTGACATGTACGATATTTCGAAGAGTTCTTTGCAGGAGAAATGGAGGGAATTTGAACGTCCAGATTCCTTTTTTGATACATCTGA GGATTACCATTCACAGGAACTGTCATTGGGTCATTACCAGAGAGAGGGACTGGAAACCAGGAGGACTAATTTGGGATTACAGCATGACGGAGACAAGGTT GAATTCTCTGGACCTCTGTTATCTCAGACGTCGCGAAGGGTGGACGAACTCTTAGAAAGACACGAGCGCCACATTCGACAGGCGGTCCGGAAATTATCAT GGTTTCAAAGAGCTTTTGCGGGGTTGAGAATGCCTGTGCTTGCTGTATTGGATTATTGGGGCGGGATTTTGGCGGCTCGATATGCGGTGGGTGATGCAGA ATTGGTGCTTTCTAGAACATCCAACCGGTGTATGGATGTGCATGTGTTGATGGTGATGGTGTGA
AA sequence Show only first row Show all	>Lus10021642 pacid=23180315 polypeptide=Lus10021642 locus=Lus10021642.g ID=Lus10021642.BGIv1.0 annot-version=v1.0 MGCVSSKQAVSVTPAAQNSGGTNSGRIRVGPGTEEKGHKNDIKKSDFSIGRGGELTKSGRGSSNGDVSLSFRFRNLHRYVEGEQVAAGWPAWLSAVAGEA IHGWVPLKADSFQKLDKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIVILRRLNHPNVMKLDGLITSHSSSSIYLVFEYMEHDITGL LSCPDVTFTESQIKCFMKQLLSGIEHCHSMGVMHRDIKGSNLLVNNQGILKVADFGLANFCSVGNNREPLTSRVVTLWYRPPELLLGSTSYGASVDLWSV GCVFAELLRGKPILRGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHSTLFKPQQHYESCILETFKDMPTSAVSLIATLLSVEHYKRGTASSALSSQYFTTE PHACEPASLPKYPPSKEIDAKNREEATRKNTSGRTNRGAETRKPVQRGHRNTTRRNMDSRKPSPKKLDGESVHDVKNQKGDISFSGPMQVSTSSGFAWAR RRREDATRVSHNESISKVHVTRDGPEPSAAIGEKNMFVSQRHDCGEIDGGIGCDMYDISKSSLQEKWREFERPDSFFDTSEDYHSQELSLGHYQREGLET RRTNLVEQLHKIFKLCGSPPDEYWKKSKLPHSTLFKPQQHYESCILETFKDMPTSAVSLIATLLSVEHYKRGTASSALSSQYFTTEPHACEPASLPKYPP SKEIDAKNREEATRKNTSGRTNRGAETRKPVQRGHRNTTRRNMDSRKPSPKKLDGESVHDVKNQKGDISFSGPMQVSTSSGFAWARRRREDATRVSHNES ISKVHVTRDGPEPSAAIGEKNMFVSQRHDCGEIDGGIGCDMYDISKSSLQEKWREFERPDSFFDTSEDYHSQELSLGHYQREGLETRRTNLGLQHDGDKV EFSGPLLSQTSRRVDELLERHERHIRQAVRKLSWFQRAFAGLRMPVLAVLDYWGGILAARYAVGDAELVLSRTSNRCMDVHVLMVMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10021642 [exp]	0	1
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	3.3	0.7279
AT2G19940			oxidoreductases, acting on the...		Lus10034096 [exp]	7.3	0.6918
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10026016 [exp]	11.0	0.6257
					Lus10026392 [exp]	13.1	0.6909
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Lus10035930 [exp]	23.7	0.6673
AT1G30320			Remorin family protein (.1)		Lus10038521 [exp]	28.0	0.6044
AT3G15460			Ribosomal RNA processing Brix ...		Lus10014058 [exp]	30.1	0.6552
AT2G16940			Splicing factor, CC1-like (.1....		Lus10025075 [exp]	43.9	0.5420
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	52.3	0.6066
AT2G34930			disease resistance family prot...		Lus10024737 [exp]	68.8	0.6048

Compare expression of checked genes

Lus10021642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.