Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17980 835 / 0 PAPS1 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) AT4G32850 707 / 0 PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), PAP(IV), nPAP, PAP(IV), PAP(IV), PAP(IV), PAP poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase AT2G25850 703 / 0 PAPS2 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) AT3G06560 269 / 2e-80 PAPS3 poly(A) polymerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034723 [exp] 1347 / 0 AT1G17980 867 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009011 [exp] 1023 / 0 AT1G17980 857 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10009641 [exp] 979 / 0 AT1G17980 800 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Lus10006029 [exp] 722 / 0 AT4G32850 911 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10006844 [exp] 687 / 0 AT4G32850 815 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10037589 [exp] 677 / 0 AT2G25850 818 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Lus10005490 [exp] 623 / 0 AT4G32850 769 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Lus10034724 [exp] 188 / 3e-52 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G043200 [exp] 996 / 0 AT1G17980 871 / 0.0 poly(A) polymerase 1 (.1), poly(A) polymerase 1 (.2) Potri.006G235400 [exp] 738 / 0 AT4G32850 909 / 0.0 poly\(A\) polymerase IV, poly\(A\) polymerase IV, nuclear poly(a) polymerase Potri.018G057200 [exp] 733 / 0 AT2G25850 920 / 0.0 poly(A) polymerase 2 (.1), poly(A) polymerase 2 (.2), poly(A) polymerase 2 (.3), poly(A) polymerase 2 (.4) Potri.008G102500 [exp] 287 / 4e-87 AT3G06560 573 / 0.0 poly(A) polymerase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04926 [flax] [poplar] PAP_RNA-bind Poly(A) polymerase predicted RNA binding domain CL0260 [flax] [poplar] NTP_transf PF01909 [flax] [poplar] NTP_transf_2 Nucleotidyltransferase domain CL0260 [flax] [poplar] PF04928 [flax] [poplar] PAP_central Poly(A) polymerase central domain
Representative CDS sequence Show only first row Show all	>Lus10021643 pacid=23180314 polypeptide=Lus10021643 locus=Lus10021643.g ID=Lus10021643.BGIv1.0 annot-version=v1.0 ATGGAGTTGATTAAATCCGAGCTCATCAAGACGAGATCGAAGCTCGCTGCGACCGAGGCTGCTGATGATAGAGCCAAGAAGCAAGGAAGCAAGGATAATA ATAGGCATGTAACTTGGAATATCCCGCATGTTGTTGATCATGATTCTGAAGGAGGAGGAGGAGGAGGAGGAGGGAAGATCATGATTCCGTTGGTGGATTA CGAGACGCTGGTGGAGAGAGCTTCGGCCTCCGCGAATAAGAATATAATGTGGAAGGACTACAATCAGTCTGCTTCGGAGTTGAAAATGGAGATGGCGAAT TTGAAGGAGGAGCTGGAAGGTGCAATGTCAAGAATCGGAGAGTTGAGGGCGAGAGCGGAGGAGGCAGTGGCCAGGGCTGATGCTGCTGAGAAAGGTAAAG CTGAGGTTGAGGAAGAGCTTAGGAAACTAAAGGAGAGGAAGGAGAAGAGGATTGCAGCTCTTGCTGCTCGTAGGCAGGAATCTTTGCAGATCTTGCCAAT GGAGTGTTCAGTTTCAAGCGAGCGTCCTAACGGGCAGCAGCAGCAGCATCGGTTAGGCATTACAGATCCTATATCATTGGGTGGACCATCTGAATATGAT GTGATCAAGACACGCGAACTCGAAAAGTATCTCCAAGATGTAGGATTGTATGAGAGTAGGGAAGAAGCTGTTTCGAGAGAAGAAGTGCTTGGACGGCTAG ATCAGATTGTCAAGCGTTGGGTGAAAGTAATTAGTCGCACCAAAGGGTTAAATGACCAACTAGTTCATGAAGCAAATGCAAAGATCTTCACGTTCGGTTC TTACAGGCTAGGGGTGCATAGCCCTGGTGCGGATATAGACACCCTTTGTGTCGCACCTAGCTACGCATCACGTGAGGAAGATTTCTTTGGAGAATTACAT AACATGCTGTTAGAAATACCAGAAGTGACAGAGGTGCATCCTGTCCCTGACGCTCATGTTCCTGTTATGGGATTCAAATTCAAGGGGGTTTCTATAGATC TACTCTATGCGAAATTGGCGCTGTGGGTGATCCCTGAAGATCTTGATGTTTCACAAGATTCAATACTACAAAATACAGATGAGCAGACTGTTCGTAGTCT TAATGGTTGCAGGGTCACTGACCAGATATTGAGTCTTGTACCAAATATTCAGAACTTCCGAACAACATTGCGCTGCTTAAGGTTTTGGGCAAAACGTCGT GGTGTATATTCAAATGTTTCTGGGTTTCTTGGTGGTATCAATTGGGCATTACTTGTTGCTCGTATCTGTCAATTGTATCCAAATGCACTTCCCAATATGC TAGTGTCTCGATTCTTCAGAGTTTATACTCAGTGGCGATGGCCAAACCCAGTCCTGCTTTGTGCTATTGAGGAAAGGTCCCTTGGGCTTCAGGTTTGGGA TCCGAGAAGAAACCACAAGGATAGATACCACCTGATGCCTATAATTACACCTGCTTATCCTTGCATGAATTCTAGCTACAATGTATCTACAAGCACCCTG AGGATAATGTCAGAAGAGTTTCAGAGGGGAAGCGAAATATGTGAGGCTATGGAAGCAAACAAAGCAGACTGGGAGACCCTTTTTGAGCCATTTTCTTTCT TTGATGCATACAAGAACTATTTACAGATTGATATAGGTGCAGAAAATGAACACGACTTACGAAGCTGGAAAGGTTGGGTTGAATCTCGTCTCCGGACACT AATGTTGAAGATTGAGAAGCAAACTTACAATATGCTTCAGTGTCACCCTCACCCCGGCGAATTCTCCGACAAATCTAAGCCTTTACACCATTGTTACTTC ATGGGCTTGCAACGTAAACAAGGAGTTCCTGTCAATGAAGGTGAACAATTTGATATAAGGGCAACAGTTGATGACTTCAAACGCACTGTGAACATGTACA CAATGTGGAAGCCTGGAATGGAAATCCAAGTCACCCATGTTAAACGAAGGAGTATACCGAGCTTTGTTTTCCCTGGTGGTGCTCGCCCTTCACGTCCATC TAGAACAACATGGGATAGTAGGCGCAGTTTGGAAGCTAAAGCATTTGGCTCTTCTGCAGCTGACAAATCCTCTGAACACAAAGAAGGTACAGATGGATCA GATGATCGGAGTAAGAGAAAGCGTATTGATGATAATGGGGACAATAACTTGGGTGCCAAGTGCTTGGCTGCTGTATCTTCATCAAGTGAAGTTCATGAAG GTAGCCCTTCTGTTAGAGTTCATTCACATTCTAACAATTGTGACCACATAAGTACAGATGAGTTTGGGGAATCTGGTATGGAGAAACACACAATAGACAG CACAGGAAATTTAGAAGTCATTGATGATGTCCCTGCCAGAGATGGTGTTTCAAATGGATCAGTAAGTTATACGCCGCCGCAGAATGTTCTGGACAACCTT GACAGATCGACCTCCAAGGAGGCAGAAAAAGTGGTGATTGAGACTATCATGTCTGGTTCATATGGTAGTCATAAAGCTTCACAACAAGAACTCGAAGAGC TTGAAGATGACTTTGGGTGTAAAAATGAGTCCAAGGATTCAGTTGTCAGCGAAATAGATGGCCCATTGGACTCTTCACCTTCAGATAGAACATCTTCCGC AATGTTGGCAAATGCACCTACAGCGATGACATTAACATCTTGTAACAGTGATGTTCAGTCGATTTCTTCTCTTCCGAATGGCAGCTTGGATGAGCTTGAG CCAGCTGAACTCTTGCCACAATCTTCAGTCGCGCCTGTGGTGCAGAGGAAGCCGCTCATCCGGTAA
AA sequence Show only first row Show all	>Lus10021643 pacid=23180314 polypeptide=Lus10021643 locus=Lus10021643.g ID=Lus10021643.BGIv1.0 annot-version=v1.0 MELIKSELIKTRSKLAATEAADDRAKKQGSKDNNRHVTWNIPHVVDHDSEGGGGGGGGKIMIPLVDYETLVERASASANKNIMWKDYNQSASELKMEMAN LKEELEGAMSRIGELRARAEEAVARADAAEKGKAEVEEELRKLKERKEKRIAALAARRQESLQILPMECSVSSERPNGQQQQHRLGITDPISLGGPSEYD VIKTRELEKYLQDVGLYESREEAVSREEVLGRLDQIVKRWVKVISRTKGLNDQLVHEANAKIFTFGSYRLGVHSPGADIDTLCVAPSYASREEDFFGELH NMLLEIPEVTEVHPVPDAHVPVMGFKFKGVSIDLLYAKLALWVIPEDLDVSQDSILQNTDEQTVRSLNGCRVTDQILSLVPNIQNFRTTLRCLRFWAKRR GVYSNVSGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVLLCAIEERSLGLQVWDPRRNHKDRYHLMPIITPAYPCMNSSYNVSTSTL RIMSEEFQRGSEICEAMEANKADWETLFEPFSFFDAYKNYLQIDIGAENEHDLRSWKGWVESRLRTLMLKIEKQTYNMLQCHPHPGEFSDKSKPLHHCYF MGLQRKQGVPVNEGEQFDIRATVDDFKRTVNMYTMWKPGMEIQVTHVKRRSIPSFVFPGGARPSRPSRTTWDSRRSLEAKAFGSSAADKSSEHKEGTDGS DDRSKRKRIDDNGDNNLGAKCLAAVSSSSEVHEGSPSVRVHSHSNNCDHISTDEFGESGMEKHTIDSTGNLEVIDDVPARDGVSNGSVSYTPPQNVLDNL DRSTSKEAEKVVIETIMSGSYGSHKASQQELEELEDDFGCKNESKDSVVSEIDGPLDSSPSDRTSSAMLANAPTAMTLTSCNSDVQSISSLPNGSLDELE PAELLPQSSVAPVVQRKPLIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10021643 [exp]	0	1
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	5.5	0.8586
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Lus10027760 [exp]	6.0	0.8837
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10015205 [exp]	8.4	0.8925
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Lus10031492 [exp]	9.2	0.8914
AT3G63460		EMB2221	transducin family protein / WD...		Lus10019752 [exp]	11.2	0.8650
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	13.2	0.8749
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	13.4	0.8827
AT5G15400			U-box domain-containing protei...		Lus10005222 [exp]	15.0	0.8281
AT1G10050			glycosyl hydrolase family 10 p...		Lus10011465 [exp]	15.5	0.8407
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	19.9	0.8700

Compare expression of checked genes

Lus10021643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.