Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69360 107 / 1e-23 Plant protein of unknown function (DUF863) (.1) AT1G13940 89 / 1e-17 Plant protein of unknown function (DUF863) (.1) AT1G26620 85 / 1e-16 Plant protein of unknown function (DUF863) (.1) AT5G61300 53 / 6e-07 unknown protein AT5G07790 50 / 7e-06 unknown protein AT1G62530 45 / 0.0001 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) AT1G12120 44 / 0.0004 Plant protein of unknown function (DUF863) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034722 [exp] 1620 / 0 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 85 / 1e-16 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 85 / 2e-16 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10030419 [exp] 73 / 9e-13 AT1G13940 397 / 1e-121 Plant protein of unknown function (DUF863) (.1) Lus10026640 [exp] 56 / 2e-07 AT1G13940 323 / 7e-96 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G092800 [exp] 84 / 2e-16 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 73 / 8e-13 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 71 / 4e-12 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.004G125900 [exp] 62 / 2e-09 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.001G121200 [exp] 44 / 0.0004 AT1G62530 106 / 5e-25 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.003G112000 [exp] 44 / 0.0005 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05904 [flax] [poplar] DUF863 Plant protein of unknown function (DUF863)
Representative CDS sequence Show only first row Show all	>Lus10021644 pacid=23180272 polypeptide=Lus10021644 locus=Lus10021644.g ID=Lus10021644.BGIv1.0 annot-version=v1.0 ATGGCAATGCTGGAAATGCAAGCAGATATGCAACAGCAGCAGCAGTATAGCTATTTCTCTGGACATTATCCGACAAGGGATCCTGGCTTGAGTGGTGACA ACATCAACATCTGGCCTCCTAGAAGTGGCAATGATGCCATTGTCTGGCCTCCGAGAAGCATCAATGACATCAACTCCATGCGGAATGCCCAACTGTACAA TGGTAGCATCATACGGAATGATCAATCCCACAATGGAAGTTTCATACAGAATGGACAACCGAACTATGACGATGTCGTAAGGAATGGACAACAGTACAAT TACTTCCTGGAATCACTGTCTCCGAATCAGCATTCAGTGTACCAGGAGATGGCGAGGCAGACAACGCTTCACCAAGAAGCTATGTCCAATAGTCATATGG TGCTGCGGTCTCCTGGACACCAGCATTTGGTTTTTAAGGAAATGGTGAAACAAACAATGCTTCAACAAGAGTCTGTATTCAAGGACCAGGTCCATTCTCT CCACTGTGTGTACAACAGACATCGAGAAATGCTTAACAAAATGAGGTTGAGGCAGTTGAATACTGACCATCCACAGCTGGAATTGTTGCGGTCAAATCCT ATCCTGTCTCGGTTTTCTTGTGAGCGAGAACAGACATGCCAAGTTGATGCAGTGCCTTGGTTGACTGGTGCGGTTAGTCAATTATCTGTTTCACCCGTTC AAAACAACCTAATTGACTTGAATTACAGTGACTATGAGGTGATCACCGATTTGTGCCATCATCCTATTCAAGCTGAGCGTCATGCCAACGAGGCTCTCGT GTTGGAGTCCAAGTTTAAAAGGTACGGAAAAAAGATATTAGATCTGGAACGTCCAGCTGAGGAGTATATTGATGGAGAAGATGGAATACCTTTATTAGCA GTAAAAGTCGAAGGCCTTCCAGAGGAAAGTTCTCGAGGTATTCTGAAGAGTGATACTGAATCGTCATTTGGCATTATGGATCTCAATTTGGAATACCAGG AAGATGACACGTTTCAGGCATTTCCAGTGAAATCTGAATGCCTAGCTGACTTGAACGAACTTGCTCAGCTGGAGGACGAAGCACTTCCTGACTCCGACGG CATGCTTAAACAGCATCTTGAACATCCAGCTGATGGATTTGACGACTCAAAAACTGGGCAATCTCACGAGTTAGCTGACTTGAGTGAACCTTCCAAGTCT GAAAAAGATACTGACCCCAAGTCCAATGCAGTTCTAAGTTCCAATCCAGGCGAAGAAATCGTGGATCAGCTGGGGAAAGTGGATAACGTTCAAGATGACT CACCAGAGCTGTCGGATAAAGAAGGGAGTAATGAGAGTTGCTCAAGTGCCTTAGATGAGGACCAGAGCGAAAGTGAGGAGGAGTTGCCATTCAACAATGA CGCGGCAGGGGAAAATAGCAGGGACACAAACTCTTTGTCTGGGGAAATCACCTCCACATTATCTGAGAACACCGAGCAAGTGGAACAAGTTACATTAGCC CAAAAGGTCGTGCGAAGAAGTGGGAGATTGAGGTGGGAAAGGCTAGCCTCTATTATCCCCACAGTCAATAGATTTACTTCAGCCAAGCGTATTCGTTGCG ATGTGACGTTCCCAGAAATAGTACAAGCACTTCCATGTGAGAAATCTCACTTGTATTCCAGAGAAATGACCAAGCGTAGGCACCATGCAATCACTGGTAG CAAGTCTGGATGTGATAAAATTATCAAACATAGAAGGAAGAGAAGGTTAATATCCCATAGCAATGGCAGCAGTGATCATGAATTTGAAGATGAGCAGGGT GGCTGTAGAAAGAACATGAAAATAGACATCAATCCTAGTGATTCTCAAGATGTGCATTCCATGCTAACTGCAAACGAGCCTAATGACAAGGCATTTCCCA GCCTTTGCATTAACACGAACTCTCACGGAAACGAAGATGAGTCTGCATCAACACCCTCCTCTCTGTCAAGAGAAGTACATTTGGTGACACCTCAAGGTTT GGAAAGCATGGAGACTTCTCAGGTAATAGGAGAACCGAAAGAAAACCTGCTTGATATGTTGGTGGAACCAGTCAGGACTGCTGCAGAGGCCCTAGTATTT ATCTCGTCACAAGTCCCAGCATGTCCTGAAGGTGTTGTTACGTCCAGCTCGTTGGAAATCTTGAATGTCGAGTCTCTCTATTGGTTGGCAAGCGTAGCTG CTTCTGTGACAGATGATCCAGAGGCTGATTATGGCCTTTCTTTGAGTAGGGGCGGTGCTGGTCTTACATCTGGGGAGATTGACTACTTTGAAGCAATGAC ATTGAAACTGCCAGAAACAGAGGGGGAAGAGTATCATTGCAGTGATGTCAGCAACCAAATGGAGGAGGGGGAGCCGTCCTTATTAGTAGATTCACCAATT CAAGAACCGCGAAAGGGCACGACAAGAAGGGGCAAGCTGCAGAAGAGGGATTTCCAAAGTGAAGTTCTTCCAGGTTTGGTCTCCTTGTCAAGGTATGAGG TGGCTGAGGATCTTCAGGTGATAGGAAGCATACCGATGGCAGCTCGTTCTCGTTACAAAACTTGTTTCCGAAAGAAGAGGTTAAAGAATAGAGCTTCTGA TTCTGCTTCAAACATGATGATCGATACTACTTCGTGTTCTTTGGAACTCGGACCGAGTACGATTGACGAAGGGTGGGGAATAGACTGGGGGAAAGTTACA AGGCGGTGCAGAGGACAGAGGTGCAGAGTATCCCTTCTGGGTTTAACCTTTGGCAATAGGTACAGGCCATGGATGAACTAG
AA sequence Show only first row Show all	>Lus10021644 pacid=23180272 polypeptide=Lus10021644 locus=Lus10021644.g ID=Lus10021644.BGIv1.0 annot-version=v1.0 MAMLEMQADMQQQQQYSYFSGHYPTRDPGLSGDNINIWPPRSGNDAIVWPPRSINDINSMRNAQLYNGSIIRNDQSHNGSFIQNGQPNYDDVVRNGQQYN YFLESLSPNQHSVYQEMARQTTLHQEAMSNSHMVLRSPGHQHLVFKEMVKQTMLQQESVFKDQVHSLHCVYNRHREMLNKMRLRQLNTDHPQLELLRSNP ILSRFSCEREQTCQVDAVPWLTGAVSQLSVSPVQNNLIDLNYSDYEVITDLCHHPIQAERHANEALVLESKFKRYGKKILDLERPAEEYIDGEDGIPLLA VKVEGLPEESSRGILKSDTESSFGIMDLNLEYQEDDTFQAFPVKSECLADLNELAQLEDEALPDSDGMLKQHLEHPADGFDDSKTGQSHELADLSEPSKS EKDTDPKSNAVLSSNPGEEIVDQLGKVDNVQDDSPELSDKEGSNESCSSALDEDQSESEEELPFNNDAAGENSRDTNSLSGEITSTLSENTEQVEQVTLA QKVVRRSGRLRWERLASIIPTVNRFTSAKRIRCDVTFPEIVQALPCEKSHLYSREMTKRRHHAITGSKSGCDKIIKHRRKRRLISHSNGSSDHEFEDEQG GCRKNMKIDINPSDSQDVHSMLTANEPNDKAFPSLCINTNSHGNEDESASTPSSLSREVHLVTPQGLESMETSQVIGEPKENLLDMLVEPVRTAAEALVF ISSQVPACPEGVVTSSSLEILNVESLYWLASVAASVTDDPEADYGLSLSRGGAGLTSGEIDYFEAMTLKLPETEGEEYHCSDVSNQMEEGEPSLLVDSPI QEPRKGTTRRGKLQKRDFQSEVLPGLVSLSRYEVAEDLQVIGSIPMAARSRYKTCFRKKRLKNRASDSASNMMIDTTSCSLELGPSTIDEGWGIDWGKVT RRCRGQRCRVSLLGLTFGNRYRPWMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13940			Plant protein of unknown funct...		Lus10021644 [exp]	0	1
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10015624 [exp]	6.2	0.8098
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	8.9	0.8016
AT1G05000		AtPFA-DSP1	plant and fungi atypical dual-...		Lus10029991 [exp]	16.5	0.7851
AT4G02040			unknown protein		Lus10019069 [exp]	19.1	0.7959
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	19.3	0.7947
AT5G51830			pfkB-like carbohydrate kinase ...		Lus10031668 [exp]	22.8	0.7919
AT2G33700			Protein phosphatase 2C family ...		Lus10030731 [exp]	25.1	0.7664
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10035010 [exp]	29.4	0.7552
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Lus10036160 [exp]	35.2	0.7348
AT5G58950			Protein kinase superfamily pro...		Lus10015314 [exp]	36.7	0.7532

Compare expression of checked genes

Lus10021644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.