Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37230 1013 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02060 357 / 3e-112 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G30290 209 / 2e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65560 196 / 4e-52 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 192 / 1e-51 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G17140 193 / 2e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 192 / 3e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G64320 190 / 8e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 188 / 5e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 184 / 3e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034721 [exp] 1506 / 0 AT2G37230 1041 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017658 [exp] 379 / 3e-120 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039056 [exp] 205 / 1e-55 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005303 [exp] 199 / 8e-54 AT1G30290 1037 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 192 / 4e-51 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 191 / 6e-51 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 189 / 2e-50 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 184 / 3e-49 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036238 [exp] 182 / 2e-48 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G077400 [exp] 1078 / 0 AT2G37230 1050 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G056400 [exp] 382 / 7e-122 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 209 / 2e-56 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 205 / 4e-56 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034400 [exp] 199 / 7e-55 AT3G22470 476 / 1e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 199 / 4e-54 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G014500 [exp] 198 / 2e-53 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G015900 [exp] 197 / 2e-53 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G082300 [exp] 197 / 6e-53 AT1G30290 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 190 / 1e-51 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021645 pacid=23180301 polypeptide=Lus10021645 locus=Lus10021645.g ID=Lus10021645.BGIv1.0 annot-version=v1.0 ATGGCCGGAATCACCGTCGCTAAGTCTTGTCGACCGAAGACAAGGCTATATCCAACTCCTCTCACCACAATCTCCCGTCATAATTATTGCACCGCCGTAG CTGCTGACGTAATCCCACCCGCTGTTCCTGCTCTACTAACCTCCGTGGATCCTCCATCACCCCATGTGCCCAAACCTCAGCCAAATCATGAATCTTTCTC CAATGAGCCAGTCCGAGAGGCTTCTGTCAGAGTCCTACGAGGTACGCGTCCGAAACCATCTGAGAAAATAGAGGATGTCATCTGCAGAATGATGGCGAAC CGTGCCTGGACTACCCGATTGCAGAACTCGATCAGGACGTTAGTGCCCGAGTTCGATCACTCTTTGGTTTACAACGTGTTGCACGGAGCTCGAAACTCAG AGCACGCGCTCCAGTTCTTCAGGTGGGTTGAGCGTTCGGGTATACTCAAGCACGACCGTGAGGCTCATGTGAAGATTATTCAGATCCTTGGGAGGGCATC CAAGCTCAACCATGCTCGCTGCATTCTGTTGGATATGCCTAAGAAGGGCGTTGAGTGGGATGAGGATATGTTCGTGCTTATGATCGATAGTTATGGTAAA GGTGGGATTGTTCAGGAGGCAGTTAAGATGTTTGATAAAATGTCTGAGTTGGGCGTCAAGAGGAGTATTAAAAGTTACGATACTTTGTTCAAGGTGATCT TCAGGAGGGGGAGGTATATGATGGCCAAAAGGTATTTTAACAAGATGTTGAATGAAGGGATTGAACCAACTAGGCATACATATAACATCATGCTTTGGGG GTTTTTCTTGTCGATGAAGTGGGATACGGCCATGAGATTCTACGAGGATATGAACAGCAGAGGGATTTCTCCTGATGTTGTCACTTACAATACTATGATT CATGGATACTCCAGGTTTAAGAAAATGGAGGAGGCAGATAAGGTTTTTGTGGAAATGAAAGGTAGGAATATTGCTCCTACTGTAATCAGCTACACGACTA TGGTGAAAGGGTATGTAGCTGTTGAGAGAGTTGATGATGCGTTGAAGTTGCTTGAGGAGATGAAGTCGTTTGGTATCAAGCCCAATGCTGTAACTTATTC TACTTTGTTGCCAGGGCTTTGTAGTGCTGGGAAAATGGCGGAGGCTAGAGATGTTTTGAAGGAGATGGTAGCAAGGCATCTTGCTCCGAAAGATAACTCG ATTTTTATCAAGTTGATTGCTAAGCAATGTAAAGCTGGAGACCTAAATGCTGCTGTTGATGTCCTCAAGGGAATGATTGGGTTGAGCATACCAACAGAGG CGGGGCATTATGGTGTGTTGATAAAGAACTTGTGCAAGGCTGGAGAGTATGATAGGGCGGTGAAGTTGTTGGACAAGCTTATTGAGAAGGAAATCATTTT GAGGCCTCAGAGTACTTTAGAAATGGAAGACAGTGCGTATAATCCGATCATTCAGTATCTATGTGGTAATGGACATACGAAGAAGGCAGAAACTTTGTTC AGGCAGTTGATGAAGAAGGGTGTGCAAGATTCGGTTGCCTTCAATAATTTAATATGTGGGCACGCAAAAGAAGGATTTCCCGATTCTGCTTTTGAGATTC TAAAGATAATGGGTCGGAGAGGTGTCCCCCGAAATTCAGAAGCTTACGGATTGTTGATTGAGAGTTATTTGAGGAAAGGTGAGCCGTCTGATGCCAAGAC AGCACTGGACAGTATGATTGAAGAAGGGCATGTTCCAGATTCATCTATATTCAGGTCGGTAATGCAGAGCTTGTTTGAGGATGGAAGAGTTCAAACTGCA AGCCGTGTGATGAAGAGTATGTTAGAGAAGGGTGTGAATGAGAACATGGATCTGGTTGATCAGATAGTTGAAGCTCTCCTCCTTAGAGGTCACATCGAAG AAGCCCTTGGACGTGTGGAGTTACTGGTTCACAGTGGATGTGCTGTGAACATCGATCATCTCTTGTCGATTCTGTGCGAGAAGAACAAGACTATTGCTGC TAACAAGTTGCTAGATTTCGCACTGGAGAGAGACGTTCAGCTGGACTTCAAAAGCTACGACAAGGTGTTGGATGCACTCCTCGAAGCAGGGAAGACCCTG AATGCGTATTCGTTGCTATGTAAAATGATGGAGAAAGGCGGAGTTACTGATTGGAGTGGCTGCCGGGATTTGATTGACAGTCTTAACAGGGAAGGGATGA CGAAGCAAGCTGATATCCTGTCGAGAGCTCTCAAGGGAGGGGAGAAGAAACCACATGCCAGCAACAAAGAGAAGAACAAAAAGAAAATGTCGGCTGCTGC TTGA
AA sequence Show only first row Show all	>Lus10021645 pacid=23180301 polypeptide=Lus10021645 locus=Lus10021645.g ID=Lus10021645.BGIv1.0 annot-version=v1.0 MAGITVAKSCRPKTRLYPTPLTTISRHNYCTAVAADVIPPAVPALLTSVDPPSPHVPKPQPNHESFSNEPVREASVRVLRGTRPKPSEKIEDVICRMMAN RAWTTRLQNSIRTLVPEFDHSLVYNVLHGARNSEHALQFFRWVERSGILKHDREAHVKIIQILGRASKLNHARCILLDMPKKGVEWDEDMFVLMIDSYGK GGIVQEAVKMFDKMSELGVKRSIKSYDTLFKVIFRRGRYMMAKRYFNKMLNEGIEPTRHTYNIMLWGFFLSMKWDTAMRFYEDMNSRGISPDVVTYNTMI HGYSRFKKMEEADKVFVEMKGRNIAPTVISYTTMVKGYVAVERVDDALKLLEEMKSFGIKPNAVTYSTLLPGLCSAGKMAEARDVLKEMVARHLAPKDNS IFIKLIAKQCKAGDLNAAVDVLKGMIGLSIPTEAGHYGVLIKNLCKAGEYDRAVKLLDKLIEKEIILRPQSTLEMEDSAYNPIIQYLCGNGHTKKAETLF RQLMKKGVQDSVAFNNLICGHAKEGFPDSAFEILKIMGRRGVPRNSEAYGLLIESYLRKGEPSDAKTALDSMIEEGHVPDSSIFRSVMQSLFEDGRVQTA SRVMKSMLEKGVNENMDLVDQIVEALLLRGHIEEALGRVELLVHSGCAVNIDHLLSILCEKNKTIAANKLLDFALERDVQLDFKSYDKVLDALLEAGKTL NAYSLLCKMMEKGGVTDWSGCRDLIDSLNREGMTKQADILSRALKGGEKKPHASNKEKNKKKMSAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	0	1
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10030026 [exp]	3.5	0.8813
AT5G60960		PNM1	PPR protein localized to the n...		Lus10017862 [exp]	4.6	0.8990
AT5G13780			Acyl-CoA N-acyltransferases (N...		Lus10019745 [exp]	5.3	0.8468
AT2G17670			Tetratricopeptide repeat (TPR)...		Lus10028379 [exp]	5.5	0.8968
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	9.2	0.8894
AT2G45440		DHDPS2	dihydrodipicolinate synthase (...		Lus10015861 [exp]	9.5	0.8565
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10012329 [exp]	12.7	0.8386
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	15.9	0.8672
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	16.9	0.8700
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10035418 [exp]	18.5	0.8553

Compare expression of checked genes

Lus10021645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.