Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02955 442 / 3e-147 MEE12 maternal effect embryo arrest 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034719 [exp] 901 / 0 AT2G02955 370 / 5e-121 maternal effect embryo arrest 12 (.1) Lus10004454 [exp] 297 / 7e-95 AT2G02955 204 / 8e-60 maternal effect embryo arrest 12 (.1) Lus10016252 [exp] 201 / 1e-60 AT2G02955 148 / 2e-41 maternal effect embryo arrest 12 (.1) Lus10030476 [exp] 196 / 5e-57 AT2G02955 79 / 5e-16 maternal effect embryo arrest 12 (.1) Lus10012828 [exp] 189 / 2e-56 AT2G02955 68 / 8e-14 maternal effect embryo arrest 12 (.1) Lus10030475 [exp] 172 / 4e-51 AT2G02955 109 / 3e-29 maternal effect embryo arrest 12 (.1) Lus10016251 [exp] 169 / 5e-50 AT2G02955 114 / 6e-31 maternal effect embryo arrest 12 (.1) Lus10016253 [exp] 128 / 5e-35 AT2G02955 63 / 8e-13 maternal effect embryo arrest 12 (.1) Lus10034720 [exp] 121 / 1e-32 AT2G02955 39 / 1e-04 maternal effect embryo arrest 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G169500 [exp] 620 / 0 AT2G02955 513 / 5e-174 maternal effect embryo arrest 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021646 pacid=23180326 polypeptide=Lus10021646 locus=Lus10021646.g ID=Lus10021646.BGIv1.0 annot-version=v1.0 ATGGACGACCACGATGACGAGGAGGCTATAAAATCTGAATGTCGATCATGCGGCGGCACCGACTTCTGCGAGAGCGACGGGTTCTACTACTGCAACTATT GCGGCTCCAAGGCCGAAGGGCTAATGGTCACAGGAACCGCCGACGAGGACTTCATCGACAAGACTGGCCGTGGCGGCGCCGGCCTTTACAACGCTAAATC TTCCCGTCGCTCGCAGGCGACAGCGCTCTCTCAGGGCACAGAAGCCAATCCTTCTTCGCAAGCTTGGTATCGGCTAACGCAGGAGGAAATGGAAAGTAAC AAGGCCATCACGCCGAAGAAGCAGCAGGGTAGTAGCTACGGCTATACCGATTTGGACCTGACTGGCCCAACGGAGCCGGCGGATTTCGGCGCGGCGGCGA CCGGGAAGCTAGAGTATGATGATTACTATAACGAGGTTAGGATTAGGTATGTTATGGGGCTTCAGTGGATGGTTCAGATGCAGTGCGATGCGTTGGTTAA GGAGTTAGGTGTTAACCCTTTGATTTGTGGAGTAGCGGCAGAAGTTTGGCTAAGGTTCGTGGTTGTAACTGGTGTGTTTAAAGATGGGTGGGCTGATGAC ACTGTGCTGGAATCCGAGTCTCAAACCCTTGAAGGAGAACATGATGGCAGTAAGGTCTGGCGCAAGCACAGGAATGAACCGCATAATGCATTTGGCCAAC GTGCAGTAATGGTTTGGTTTAGGAGTTTGAGGAAACAGATACCTCTAGATTATTCTCTGGCTATATGTTTCTTGGCTTGCCATGTTGCAAGAGAAGCAGT TCTACCGACTGACATAGTGAAGTGGTCAATTGAAGGGAAGATTCCCTATTTTGCTGCTCACATTGAAATCGATAAGCGTTTTGAAGGTCCCTCGCTTGCC TGTCCAATAAGCTCAGCACTAATGTTTAGGCCATTGCAGCCAATACCAGTCCAGAAGTTAGAAGCAATGGCTGGTATTATAGCTGGGTCGGTGGGTTTGC ATCTACCTCCAGTAAACTTCCATGCAGTAGTGTCTCGGCTTCCGACTCGTGTATGTGTGATGTCGATACTGATGGTAGGGATTAGAATTCTCTATAACTT GCATGGCTTTGGTGCATGGGAAAGGAGCTTATCGAAGAGTGCACCGAGTCAGATGTCAGAGCTTGACTCTGAGGAACTTCTGCACAAACTTGAAACAGGA TATAGCAAGATTGGAGGACCATGTGAATTTGCCAAAAACTTGACATCGTATCTCCAGTACTGTAAAGACGTGGTATTTGAAGGAAGTGGGTCGTCTTCAC AGAAAGCTCTGTCCGAAGGTGAAGAAGAAATGATAGAGAAGCTGTGGGATTATTATCAGATTTCAGAGGATTTTGAGCCTGCAGATGAACTGCTTGGAGA AAAAGATGTCACATTGAACCAAAAACGAACAGGGAGCGAACAAAATCACAGCCCAACTGTGTCAGGATCGATACAATCCAGAGACACGCCCAATGACAAC AACACCATTCGTGAACGGCCACCCCACACACGCCCTGCAGCAGACCCTCCAAAAGAAGCCAACTCCGAGATCAGAAGAATGAAGATGGACATGGAGGAGA ACCGGTTCTGCTACATCCCACCAAGGGTCAACGTGAAACGATCCGAAGGATACCTCTACTACAACAGGAAGCAGGACGATGGCTCATACAGGTACGTCGC TCACGCGGACTACTACATCCTGCTGCGGTCCTGCGCGAAGGTTGCCCAGGTCGACATCAGGATCATGCACATTGGAGTGCTGGGTTTGGAGAGGAGGTTG GCTTGGTTGGAGAAGAGGATTGAGCATTGCTTACATTTAAATCCTCCTAGTTTGACCTGCGACTTCTGTAGAGATGATGCGACAGCTTCTGAGTTGGATG ATCTTGGAACAACACTCACACCAAAGATGAAGCTTTGA
AA sequence Show only first row Show all	>Lus10021646 pacid=23180326 polypeptide=Lus10021646 locus=Lus10021646.g ID=Lus10021646.BGIv1.0 annot-version=v1.0 MDDHDDEEAIKSECRSCGGTDFCESDGFYYCNYCGSKAEGLMVTGTADEDFIDKTGRGGAGLYNAKSSRRSQATALSQGTEANPSSQAWYRLTQEEMESN KAITPKKQQGSSYGYTDLDLTGPTEPADFGAAATGKLEYDDYYNEVRIRYVMGLQWMVQMQCDALVKELGVNPLICGVAAEVWLRFVVVTGVFKDGWADD TVLESESQTLEGEHDGSKVWRKHRNEPHNAFGQRAVMVWFRSLRKQIPLDYSLAICFLACHVAREAVLPTDIVKWSIEGKIPYFAAHIEIDKRFEGPSLA CPISSALMFRPLQPIPVQKLEAMAGIIAGSVGLHLPPVNFHAVVSRLPTRVCVMSILMVGIRILYNLHGFGAWERSLSKSAPSQMSELDSEELLHKLETG YSKIGGPCEFAKNLTSYLQYCKDVVFEGSGSSSQKALSEGEEEMIEKLWDYYQISEDFEPADELLGEKDVTLNQKRTGSEQNHSPTVSGSIQSRDTPNDN NTIRERPPHTRPAADPPKEANSEIRRMKMDMEENRFCYIPPRVNVKRSEGYLYYNRKQDDGSYRYVAHADYYILLRSCAKVAQVDIRIMHIGVLGLERRL AWLEKRIEHCLHLNPPSLTCDFCRDDATASELDDLGTTLTPKMKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10021646 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10033607 [exp]	4.2	0.9604
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10021978 [exp]	6.9	0.9485
AT1G09590			Translation protein SH3-like f...		Lus10017232 [exp]	8.2	0.9509
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10015198 [exp]	9.1	0.9516
AT2G31610			Ribosomal protein S3 family pr...		Lus10012857 [exp]	10.8	0.9513
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	12.1	0.9407
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10006565 [exp]	14.1	0.9464
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	14.8	0.9502
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Lus10004628 [exp]	16.0	0.9482
AT2G14860			Peroxisomal membrane 22 kDa (M...		Lus10002118 [exp]	16.1	0.9362

Compare expression of checked genes

Lus10021646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.