Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39380 97 / 8e-21 Plant calmodulin-binding protein-related (.1) AT5G15430 90 / 2e-18 Plant calmodulin-binding protein-related (.1) AT5G61260 78 / 1e-14 Plant calmodulin-binding protein-related (.1) AT5G07820 74 / 2e-13 Plant calmodulin-binding protein-related (.1) AT5G04020 46 / 0.0002 calmodulin binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034718 [exp] 587 / 0 ND 47 / 4e-05 Lus10034717 [exp] 384 / 2e-127 AT5G39380 86 / 1e-19 Plant calmodulin-binding protein-related (.1) Lus10000209 [exp] 176 / 4e-46 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10015733 [exp] 176 / 1e-45 AT5G15430 58 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10000141 [exp] 162 / 7e-42 AT5G15430 57 / 1e-08 Plant calmodulin-binding protein-related (.1) Lus10003472 [exp] 163 / 2e-41 AT5G15430 58 / 2e-08 Plant calmodulin-binding protein-related (.1) Lus10030701 [exp] 104 / 9e-23 AT5G39380 132 / 6e-33 Plant calmodulin-binding protein-related (.1) Lus10026227 [exp] 49 / 3e-05 AT5G10660 61 / 7e-10 calmodulin-binding protein-related (.1.2) Lus10042442 [exp] 48 / 3e-05 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049600 [exp] 104 / 3e-23 AT5G39380 94 / 2e-20 Plant calmodulin-binding protein-related (.1) Potri.017G090200 [exp] 104 / 1e-22 AT5G39380 134 / 4e-33 Plant calmodulin-binding protein-related (.1) Potri.012G067100 [exp] 84 / 1e-16 AT5G07820 96 / 4e-21 Plant calmodulin-binding protein-related (.1) Potri.006G274600 [exp] 50 / 4e-06 AT5G24880 60 / 2e-09 unknown protein Potri.018G005500 [exp] 47 / 8e-05 AT5G10660 61 / 8e-10 calmodulin-binding protein-related (.1.2) Potri.001G024100 [exp] 45 / 0.0003 AT2G38800 134 / 2e-32 Plant calmodulin-binding protein-related (.1) Potri.003G201400 [exp] 45 / 0.0004 AT2G38800 145 / 4e-36 Plant calmodulin-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07839 [flax] [poplar] CaM_binding Plant calmodulin-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021647 pacid=23180264 polypeptide=Lus10021647 locus=Lus10021647.g ID=Lus10021647.BGIv1.0 annot-version=v1.0 ATGGTTATGGTGGACAACAACATATCTGATACAATCTTACAGACAGAAGTCCTCCCAATGGCCACAGAAACCAATGCGATTCCCGGCAAAGATTCCTTCT TACTGCCCCCGAAACGTAACGAATCTGCCCCAACAGACAGTGGAAACAAGGATGAATCCTTGGTTACAGCAGCAAATGATCACAAGATCAGTAATAAAGG CCAGTTAAGAAGGTCCTCAACAGGAAACATTGCATTGCCATACACCAAAGTCAAGGTCCTTTCGCGGTACCTAGAATCCTCGTCGATTGGCTCATGCCAC GACTACTGCAAGTATGGGGCGAGGAGAGAAGGTGAGGAGGCAACTCCTCATGATGATCAGTACTCCTCAACGTTCATGAAGAGAGTCAATGATGCATTGG GGAAAGGGCATCAGATGTTCAAGCATACTGCTACTTTGATGGAGAGGAGGAAGAAGAGGTCAATCCATGTCACACCAACAACTACAAAGACTGCATCTTT AAGCCTCGACAGCCCGAAAGCTGATCATTCACCACTTTCAATCCATCTCACACCAATAACAAAGACTGCATCTTTAAGCCTCGACAGCCCGAAAGCTGAT CATTCACCACTTTCAATCCATCTCACACCAATAACAAAGACTGCATCTTTAAGCCTCGACAGCCCGAAAGCTGATCATTCACCACTTTCAATCCATCTCA CACCAATAACAAAGACTGCATCTTTAAGCCTCGACAGCCCGAAAGCTGATCATTCACCACTTTCAATCCATCTCACACCAATAACAAAGACTGCATCTTT AAGCCTCGACAGCCCGAAAGCTGATCATTCACCACTTTCAATCCATCTCACACCAATAACAAAGACTGCATCTTTAAGCCTCGACAGCCCGAAAGCTGAT CATTCACCACTTTCAATCCATCTCACACCAATAACAAAGACTGCATCTTTAAGCCTCGACAGCCCGAAAGCTGATCATTCACCACTTTCAATCCATCTCA CACCAATAACAAAGACTGCATCTTTAAGCCTCGACAGCCCGAAAGCTGATCATTCACCACTTTCAATCCATCTCACACCAATAACAAAGACTGCATCTTT AAGCCTCGACAGCCCGAAAACTGATCATTCACCACTTCCATCCAACAGCAGAAGATCAGCTAGGACCAATTCAAAGGTTGTTCATAATTCACCTAGGAGA CCAGATTCTGATGTGGCTTCAAAGCATCATGCTGGCGGTGGTGGTGTTGGATTGAGGCTCAACTCATCGTCTGCATCAGAAATCGCTGTAGTTGGCAGTC CAATTAAGCTCGAATCGAAACGGGATGATGGAACACCTACTTTGGTGAGAAGTAGGACAACATTGTCAAAACAGCTGTCTGGTTCAGAACTTGGTTTAGT TGCTACTAGTCCTCCTCCTAGATATGAGAAGCACAGAAGATCCAAGTCGGTCTCCAAAGTGGAAATTTCTTCTTCTTATTCTTATTCTCCGCCTTCAGTC GACAAGCTGCCGATCCTGTCAAAGATCTACTCATCATCACCAACAATTGTATCCGAAATTGATGGTGTTTCATCAGCTTTAACCAACCCAAAGTTCCAAA GATTTGAGGCTTTCATCTCCCCATTAATACACAGGAGAGGACATAGCATGCCCAAATTGCCACTCTCTTCTTCTCCTTTGAAAGAAGTTGATGGCTCCTC CAAAAAGTCTCTGCTGCCAAGAAGTCTCAGTGCTAATAAAGACAGAAAATATCACAGAAGTAGTAAAAGTCTAGAAGAAGCTTTGGTGTCGTCAAGTCCA ATTGAAGGTTTGAGAAAATCTAGGAGTATTTCTATCAGAACAGAACAAAAGGGCTCTGGTACTGTTCATGATCATGAGAAGAAGCTTGTTGAAAAAGGAA CTGTTGCTTCTCCTGCAAGGCACAAGTTTTTGAGGAGGCAGTCTACATCAGGGCCTCTTAGGAGCTCATGGAAGACTCTTACTCCAAGGATTAATGGTGA CAAGAGTGAGAATAGGAAAACTATCCTCTCCCCATTGAAAGAGGATCATCATCAACATCCTAACAATCTCAAGAAACTTGAAGCTGAAGAAACCAAGGAT GAGAAAGGTTCTTCAGATGAGAAAGCACCGAACTCCACAGAAGTAATGAAGTCATCATCTTTAGTCTCACAAGCAAAACATGAGGCCACTAGCAAGAGCA GTAATAAGTCAAGTAGTAGTTCAGAAAGGAAGAGGTTCATCAAGCGCGCTCAAAATAACGTTCGTCAGAGTCCACTGTTCCACGAGAAGTACAAGATTTT ACGACGAACGGGCGCTAGATCAGTAGTTTCTGAACCAATGGTGGGGCCATCAGATGATTGCTTGAGTGTGATGTCATCAACAGACAGCTGTGAGACTGAC CATGTCCTAGAGCAGAAAGCAATGGAGAGAGTGCTGGCTTCTAGGATTAATGCTCATTTCAGTAGAGGTACAAGGCGTAGAGCTTCGATGAACATTGGAG GTTACCAAGATGCGCCGGCAAGAAAGCTCAAGTTCAGGCCAGGAAGAGTGATTGAGTTCAAGTCTGAGATTAACAGTCCTTGCAGGAGGCTCAAGTTCAA GAGGAGAACAACACCGAGGAGCGGTATTGGTAGTCCGAAATCGAACGTTGGGATGATTTTCGGGGTGCTAAGGAAGGCAGGAGGAGGGAGGAGAGAAAGT ACCAACAATAGAGTTCAGTTTGCAGATGTTAATGCTGCTGCTGCTGAGAAAGTGGTTCTGAGACATCAAGAGATGCAGCAAGAGAAAGGGTCACAACTTG CTTCATTGAACAATGTGATTGAAGAAACAGCAAGTAAGCTTGCCGAAGATAGGAAGAGCAAAGTGAAGGCTCTTGTTGGTGCTTTTGAGTCATTGCTCAC TCTTCAAGATTCCAAACCCACTTCTCCAACTGTTACTGCATGA
AA sequence Show only first row Show all	>Lus10021647 pacid=23180264 polypeptide=Lus10021647 locus=Lus10021647.g ID=Lus10021647.BGIv1.0 annot-version=v1.0 MVMVDNNISDTILQTEVLPMATETNAIPGKDSFLLPPKRNESAPTDSGNKDESLVTAANDHKISNKGQLRRSSTGNIALPYTKVKVLSRYLESSSIGSCH DYCKYGARREGEEATPHDDQYSSTFMKRVNDALGKGHQMFKHTATLMERRKKRSIHVTPTTTKTASLSLDSPKADHSPLSIHLTPITKTASLSLDSPKAD HSPLSIHLTPITKTASLSLDSPKADHSPLSIHLTPITKTASLSLDSPKADHSPLSIHLTPITKTASLSLDSPKADHSPLSIHLTPITKTASLSLDSPKAD HSPLSIHLTPITKTASLSLDSPKADHSPLSIHLTPITKTASLSLDSPKADHSPLSIHLTPITKTASLSLDSPKTDHSPLPSNSRRSARTNSKVVHNSPRR PDSDVASKHHAGGGGVGLRLNSSSASEIAVVGSPIKLESKRDDGTPTLVRSRTTLSKQLSGSELGLVATSPPPRYEKHRRSKSVSKVEISSSYSYSPPSV DKLPILSKIYSSSPTIVSEIDGVSSALTNPKFQRFEAFISPLIHRRGHSMPKLPLSSSPLKEVDGSSKKSLLPRSLSANKDRKYHRSSKSLEEALVSSSP IEGLRKSRSISIRTEQKGSGTVHDHEKKLVEKGTVASPARHKFLRRQSTSGPLRSSWKTLTPRINGDKSENRKTILSPLKEDHHQHPNNLKKLEAEETKD EKGSSDEKAPNSTEVMKSSSLVSQAKHEATSKSSNKSSSSSERKRFIKRAQNNVRQSPLFHEKYKILRRTGARSVVSEPMVGPSDDCLSVMSSTDSCETD HVLEQKAMERVLASRINAHFSRGTRRRASMNIGGYQDAPARKLKFRPGRVIEFKSEINSPCRRLKFKRRTTPRSGIGSPKSNVGMIFGVLRKAGGGRRES TNNRVQFADVNAAAAEKVVLRHQEMQQEKGSQLASLNNVIEETASKLAEDRKSKVKALVGAFESLLTLQDSKPTSPTVTA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15430			Plant calmodulin-binding prote...		Lus10021647 [exp]	0	1
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	9.3	0.8068
AT2G41480			Peroxidase superfamily protein...		Lus10007052 [exp]	10.8	0.7663
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	17.2	0.8016
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	23.0	0.7666
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	23.6	0.7961
AT1G08790			Protein of unknown function (D...		Lus10006560 [exp]	25.5	0.7873
AT3G05950			RmlC-like cupins superfamily p...		Lus10015128 [exp]	29.1	0.7681
AT3G57440			unknown protein		Lus10042062 [exp]	30.3	0.7794
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	33.5	0.7785
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	33.9	0.6572

Compare expression of checked genes

Lus10021647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.