Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 263 / 4e-83 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 258 / 3e-81 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49200 209 / 9e-63 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 205 / 1e-60 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT3G51930 54 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 54 / 2e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G21040 53 / 3e-07 FBX2 F-box protein 2 (.1.2) AT1G47610 52 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G19430 49 / 4e-06 DWA1, AtTHO6 DWD (DDB1-binding WD40 protein) hypersensitive to ABA 1 (.1) AT5G25150 49 / 9e-06 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021656 [exp] 634 / 0 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1) Lus10021655 [exp] 500 / 5e-177 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 412 / 2e-141 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10034716 [exp] 366 / 1e-124 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 356 / 1e-122 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 327 / 4e-107 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001652 [exp] 304 / 3e-102 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014595 [exp] 317 / 2e-100 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10038890 [exp] 255 / 7e-81 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134800 [exp] 260 / 6e-82 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.015G137200 [exp] 254 / 1e-79 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 250 / 4e-77 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.004G150700 [exp] 53 / 4e-07 AT3G18860 1099 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.004G148400 [exp] 51 / 1e-06 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G130400 [exp] 51 / 1e-06 AT2G26490 632 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G038400 [exp] 50 / 3e-06 AT2G26490 631 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G250200 [exp] 48 / 1e-05 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2) Potri.009G112184 [exp] 48 / 2e-05 AT3G18860 1128 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G002300 [exp] 47 / 2e-05 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10021648 pacid=23180342 polypeptide=Lus10021648 locus=Lus10021648.g ID=Lus10021648.BGIv1.0 annot-version=v1.0 ATGGTGCTCAAATCAAATGTGTTCGATCGACTCGGGGTTTCTGGACATGATCAGAAGAATAGTCGGACCGTTTGTCGATTCTGGAAAGTGGGAAAGTGCA CTCATCAACCCTGCAGATACTTCCACGGTGAATCTCCTTCTGCGGCCCCGTCTCCATCACCGTACCGTCGTTCTAACGTCAATAATCGAGGAGGATCTCA GTACTCGTCACAGCAGCCTCGTTCGAATGTCTACATTCGACCATCTCCATCAAAACCGCCGCCGTCTACTCCTGTGGACAGCCGCCAAAGAGATTCACCC AAACAGGCTACTCTCCAAAAACCCAACAACGTTTCTGATGAGAAGATCATCTTGATCGCTGAAGATGATCAAAAGAAGAGCGAAGAAGAGACTATATGTG GAGAGTGGAAGTCGGGGAATTGCCTCAGAGGTGATAAGTGCCAGTTTTTACACTCTTGGTCTCGTGGAGATGGGTTCTCGATGCTTGGAAGGCTTCAAGG GCATGGTAGTTCGGCTGTTTCAGGGCTCTCTCTTGCTTCTGAGGTTTCTAAGCTTTTCTGTGGAACCAGTGATGGGGTTCTGCAATCATGGAATTCCGTA ACTGGTGACGTTGTGGGGTCACTGAATGTTGGTGGGAAGATTGGGTGTATGATTACGGAGGGTGATTGGCTATATGTTGGATTGCAAAGTATGGTCCAGG CATGGAACATTCACTCCGGTGCTCAACACATTCTCGCAGGCCCAGTTGGCCAAGTTCACGCATTGACTGTTGACTATGAGATGACGATTGTGTTTGCTGC CGCTGAAGATGGTATCATTTGGGCGTGGAAGACTAATACCGACGAGCACGGAAATATTTTCCAGCCAACTGCATCACTGATAGGCCATACAAGTGCAGTT ATTTCCCTGAGGTCTGGAGCAGGTAGTAGGGTGTATTCGGGTTCCATAGATGGAACCATCAAAGTTTGGGATGGTAGAACTTCTCAATGCATACAAACAT TAAAGGGGCATGATGATGCAGTGACGTGTCTCCTCTGCTATAGATGCTACTTGTTGTCCTGCTCACTGGATAAGAAGATAAAAGTATGGGGTCACAATAA AGAAAGAAGACTGGAAGTTGAATATACCCATGAAGAAGCAGATGGTGGTCTAGCTTTGTGTGGAATAGAAGAGTGTGGGAAAGAGATGTTGTTGTGCTCT TGGAACAATGATTCGGTTGGATTGTATGAGCTTCCGTCATTTGTTGAGAAAGGGAGAATGTACATGAAATGTGAAGTAAGGAGCTTGGGGGGAGGTACTG GAGGGATGTTCTTCACTGGAGATGCTTCTGGTGTGGTGACTGTATGGAAACTTGCAGAAGAAGCAAAAAATGGAGCAGTAGAAGTAGTAGTTTGA
AA sequence Show only first row Show all	>Lus10021648 pacid=23180342 polypeptide=Lus10021648 locus=Lus10021648.g ID=Lus10021648.BGIv1.0 annot-version=v1.0 MVLKSNVFDRLGVSGHDQKNSRTVCRFWKVGKCTHQPCRYFHGESPSAAPSPSPYRRSNVNNRGGSQYSSQQPRSNVYIRPSPSKPPPSTPVDSRQRDSP KQATLQKPNNVSDEKIILIAEDDQKKSEEETICGEWKSGNCLRGDKCQFLHSWSRGDGFSMLGRLQGHGSSAVSGLSLASEVSKLFCGTSDGVLQSWNSV TGDVVGSLNVGGKIGCMITEGDWLYVGLQSMVQAWNIHSGAQHILAGPVGQVHALTVDYEMTIVFAAAEDGIIWAWKTNTDEHGNIFQPTASLIGHTSAV ISLRSGAGSRVYSGSIDGTIKVWDGRTSQCIQTLKGHDDAVTCLLCYRCYLLSCSLDKKIKVWGHNKERRLEVEYTHEEADGGLALCGIEECGKEMLLCS WNNDSVGLYELPSFVEKGRMYMKCEVRSLGGGTGGMFFTGDASGVVTVWKLAEEAKNGAVEVVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021648 [exp]	0	1
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	1.4	0.8418
AT3G09032			unknown protein		Lus10027777 [exp]	2.6	0.8441
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10019490 [exp]	4.5	0.8343
					Lus10002111 [exp]	5.2	0.8372
AT3G10680			HSP20-like chaperones superfam...		Lus10034875 [exp]	6.5	0.8286
AT2G27950			Ring/U-Box superfamily protein...		Lus10016162 [exp]	9.2	0.8030
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	12.5	0.8046
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	12.6	0.8364
AT1G31720			Protein of unknown function (D...		Lus10037256 [exp]	14.5	0.8154
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	15.9	0.8247

Compare expression of checked genes

Lus10021648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.