Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04780 343 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G52630 242 / 4e-75 MEF1 mitochondrial RNAediting factor 1 (.1) AT4G02750 246 / 7e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 239 / 2e-72 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 237 / 1e-71 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 232 / 3e-70 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 234 / 4e-70 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 232 / 1e-69 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G25360 230 / 7e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 232 / 1e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034715 [exp] 591 / 0 AT5G04780 676 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 243 / 6e-74 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 239 / 5e-73 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 239 / 2e-72 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10012971 [exp] 235 / 3e-71 AT1G68930 487 / 5e-163 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 239 / 7e-71 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 236 / 7e-71 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022890 [exp] 235 / 8e-71 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031994 [exp] 234 / 2e-70 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G241100 [exp] 344 / 7e-115 AT5G04780 572 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 254 / 4e-78 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 254 / 1e-77 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 252 / 2e-77 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G155100 [exp] 248 / 2e-75 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 246 / 7e-74 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 242 / 1e-73 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G053500 [exp] 239 / 1e-73 AT5G52630 785 / 0.0 mitochondrial RNAediting factor 1 (.1) Potri.016G075000 [exp] 238 / 9e-73 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 239 / 3e-72 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021649 pacid=23180352 polypeptide=Lus10021649 locus=Lus10021649.g ID=Lus10021649.BGIv1.0 annot-version=v1.0 ATGTCCGAGAAAACTGATGTCACGTGGAGTTCAATGGCTGCTGGTTTAGTCCAGAATAAGCTTTATGAGGAGGCTTTGGTGTTATTCACCAGAGCTCGGG CAACAGCAGGGCTCGAAGATGACAAGTTCATGATGTCTTCTGCTATCAGTGCTTGTGCAGGTTTGGCAGCTCTGAGATGCCTTCAGATTGTATCAGGATA TGGAAGAAGACAACAAGAATGTGGTTCTGTGGAGCGTGATCATCTCTGCATTTGCCAAGCATTCCCGGTCGCTGGAAGTGATGGTTTGTTTGAGAAGATG CAGCAGGCCGGTATGGAGCCAGATGAAGTTACGTATATTTCAGTACTCTCAGCATGTAGTCATATGGGTCTGGTTAACGAAACTCGAATTTATTTCCGCC TCATGACAGAACAACACAACGTATCTGCCATTGTCCTCCACTACTCTTGTATGGTTGATGTATTGTGTAGGGCAGGTGTCGTTCATGAAGCTAACAAGCT AATGAAGAACATGCCGTTCGATGCTACTGCTTCGATGTGGGGATCGCTTCTAGCATCTTGCATGGTCCGTGGCAATGTTGAGTTAGCAGAGGTAGCAGCG AGAAACTTGTTCGAGATGGAACCCAGGAACGCAGCAAACTACGTTATGCTGTCGAATGCATATGCTGCTGGAAACCAGTGGGAGGATGTGTCAAGAACAA GGAAGCTCATCAAAGAGAATGAGGTGAATAAAGAGAGAGGAAAGAGCTGGCTTGAGATCAAGGACAAGGTTCATACTTTCTTAGCTGGAGAAAGAAACCA TCCTAGAACCCGGGAGATTTATGTGAGATTGGATAGGCTGATGGAAGAGGCAAAGGAAAGAGGAGGCTATAAGCCTGAAACTTGCTATGACTTCCATCAT GTGGATGAAAGCAAGAAGCTGGAACAGTTGAAACATCACAGTGAGAAGCTAGCTGTTACTTTCGGACTCATGAGCTTGCCAGTCAGCATACCTATCCGGA TCATGAAGAATCTGGCGGATTTGCGGGGACTGCCATTCTTTTATGAAGTCTGTATCTAG
AA sequence Show only first row Show all	>Lus10021649 pacid=23180352 polypeptide=Lus10021649 locus=Lus10021649.g ID=Lus10021649.BGIv1.0 annot-version=v1.0 MSEKTDVTWSSMAAGLVQNKLYEEALVLFTRARATAGLEDDKFMMSSAISACAGLAALRCLQIVSGYGRRQQECGSVERDHLCICQAFPVAGSDGLFEKM QQAGMEPDEVTYISVLSACSHMGLVNETRIYFRLMTEQHNVSAIVLHYSCMVDVLCRAGVVHEANKLMKNMPFDATASMWGSLLASCMVRGNVELAEVAA RNLFEMEPRNAANYVMLSNAYAAGNQWEDVSRTRKLIKENEVNKERGKSWLEIKDKVHTFLAGERNHPRTREIYVRLDRLMEEAKERGGYKPETCYDFHH VDESKKLEQLKHHSEKLAVTFGLMSLPVSIPIRIMKNLADLRGLPFFYEVCI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10021649 [exp]	0	1
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	2.4	0.8521
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	2.4	0.8600
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	4.0	0.8537
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011716 [exp]	7.7	0.8451
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10039935 [exp]	8.8	0.8308
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Lus10032700 [exp]	8.8	0.7428
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	10.6	0.8270
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10011717 [exp]	10.7	0.8360
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	12.6	0.7850
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	14.8	0.8139

Compare expression of checked genes

Lus10021649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.