Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47210 551 / 0 MYB myb-like transcription factor family protein (.1) AT5G61280 81 / 8e-17 Remorin family protein (.1) AT1G13920 52 / 7e-07 Remorin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003470 [exp] 698 / 0 AT2G47210 631 / 0.0 myb-like transcription factor family protein (.1) Lus10015735 [exp] 595 / 0 AT2G47210 528 / 0.0 myb-like transcription factor family protein (.1) Lus10034714 [exp] 267 / 3e-84 AT5G61280 98 / 5e-24 Remorin family protein (.1) Lus10034713 [exp] 166 / 4e-48 AT2G47210 86 / 9e-21 myb-like transcription factor family protein (.1) Lus10036964 [exp] 55 / 7e-08 AT1G13920 87 / 2e-19 Remorin family protein (.1) Lus10037111 [exp] 55 / 9e-08 AT1G13920 91 / 4e-21 Remorin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G117400 [exp] 646 / 0 AT2G47210 617 / 0.0 myb-like transcription factor family protein (.1) Potri.015G049700 [exp] 112 / 1e-27 AT5G61280 113 / 2e-30 Remorin family protein (.1) Potri.008G093300 [exp] 57 / 2e-08 AT1G13920 80 / 1e-16 Remorin family protein (.1) Potri.010G160900 [exp] 56 / 4e-08 AT1G13920 99 / 1e-23 Remorin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03763 [flax] [poplar] Remorin_C Remorin, C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10021650 pacid=23180269 polypeptide=Lus10021650 locus=Lus10021650.g ID=Lus10021650.BGIv1.0 annot-version=v1.0 ATGGACGCCAAGGACATCCTTGGATTGGCCAGAACGCAACTCCCCGAGAGGAAGTCCCAGCCCAAGAAAGATTCCCACAGGAAACCAGATGGCATTTCGC GCGAGGTTTATGCTCTTACGGGAGGGCTGGCGCCTTTAATGCCGTCGCTTGATTCTTCCCACTTGAAGAAACAGCCTCCTTCCAGTGAGAAGATAACTTG GCAGTGGCTTCCGTTCACAAATTCAGCTCGGAAGGACTCTCTGCAGCTTTATCATTGGGGCAGAGTGGTGAATGGTGTTCCTCCAACAGGCGATTATGCA TTCGCCAAATACAATAATTCCGTTGAGGCTATCAAGTACACAGATGAGGAATATCAACAGCATTTGACCGATCCTTCATGGAGCAAGCAGGAGACAGATC AGCTGTTCGACTTGTGCGAGCAATTTGATCTCCGCTTTGTTATTGTAGCAGACAGATTCCTGTCTTCGCGAAGTATGGAGGAATTGAAGGATCGGTATTA TACTGTACCTTCTCTTTTTCCAGCGTCTCGGTCCATATTGCTTGCTAGAGCTTCAAATCCAGCTGATGTGTCAGGGCACCCTCTGGTTAAGGAACGGTAC AATGCCTTAAAAGAGAAAGAGCGTAAACGTGCTTTGTCCATGGTTCTCGCCCAAACGAAGCACCAAGAGAAAAGGGAGACTGAGGTCCTTGCTGAAGCAA AAAAAATTACTGAACCATGGATAGCTACGAGGTGTACTAATGAATCTGTAAAGCCTGTTGGGGAGAATGACGTTGTTGAGATGACTATTGATCAGAACGA GTCTGTTTTGCCTCCATTGGATATGCGACTTGCACCTTCAGATTTAGTCATTGCAGATACTGCTTCTACGATGGATTCACTGCGTATGCTTCCAGTATAC TTGAGGACGTATGCACTTGAGCAAATGGTGCAACAAGCAAGTTCAATAGCAGGAATTCGTACTATCAAGCGAGTTGAACAAACCTTGCATGATCTTGAGA TTAATTTAAAGCCTAAGGTGCCAACGAAAGCTGTCTGTGCTGAGCACCTTGAGCTGAGAAAGGAAATACTGACACTGCTGAACCTTCAAAAACAATTGCA ATATATAGAGGCAGAAGGTTCTTCTGCTCGTGAAGGTGCCCAATATGAAATGCCAGGCACACCGAAGCGTCTAGTTCGAGATCATGATCGTGCTTTCATT CCTGACATGATGGGTTTTGGAGGTGAAAGAGGTGGAAGGAAGGATCAGAAACGCAAGGGACCTGGAAGAGTATCTGAGAGACTATCATCTCCAGCTAATA AGTGGCCACGAAAAATGAAGGCAGTGACTTTCTCCGAAAAGCAAGAATCCTTCGATGGAGACAACAAGGTGCAGAGAAGTTGGTTCCATGGGCAGGACTT CTATGAATATGACCCCAGAGAGATGGAGTATTCAGCTGCTATTGCTGCTGCTGCATTCGCTATATCGTCGACAGAAGAAGCTGAAGCAGATCGCTTAAGG AAGATCAAAGTGGACAGTCAGAGGTCAATGGGAAGAGTTAGATCCTTCAAAGAAGTTTCCATCACAAGATTAGGGTCTTTCAGAAGCTTGTCCATCAAGG AAGATAGAGACCCAGGTGAATCTTCTAATCGAACACAAGAGAATCAGGATCAAAGGGTGCAGCAGCAGGAAAGTGGCTTCCTTGCTAAAAGGCCAAGCCT TTCTTCTTCCACTATGAGACCTGAACAAGGAAAGCAGTATCAAAGAAGCTATTCAACGAGAAGGGAAGCCGATTTTGCAGGACCAGATTCTTGGGAGACG GCTCAGCTGAGGAAGATCAGCAAAAGGTACGAGAAAATGAAGTCAAAGGTTATTGCTTGGGAGGAAGCAAAGAAGATGAAGGCCAAACTGCACATGGAAA GAAAAAGGAATGAGATGGAATTGAGAACAACAAGGAACATGCAGCATTACCAGAGCAAGCTAGTGAGGATTGATATGATTGCTAGTGGAGTAATGGAACA GCTGGATGAGAAAAGAAGAAAAGAAGAAGCTGAGGTGAAAGAGAAGGTTAGGCACGGTGGTTCGAAAGCTCATGGTAGCTCAAAGAACTCCTGCTTCTGG TGGAACTAA
AA sequence Show only first row Show all	>Lus10021650 pacid=23180269 polypeptide=Lus10021650 locus=Lus10021650.g ID=Lus10021650.BGIv1.0 annot-version=v1.0 MDAKDILGLARTQLPERKSQPKKDSHRKPDGISREVYALTGGLAPLMPSLDSSHLKKQPPSSEKITWQWLPFTNSARKDSLQLYHWGRVVNGVPPTGDYA FAKYNNSVEAIKYTDEEYQQHLTDPSWSKQETDQLFDLCEQFDLRFVIVADRFLSSRSMEELKDRYYTVPSLFPASRSILLARASNPADVSGHPLVKERY NALKEKERKRALSMVLAQTKHQEKRETEVLAEAKKITEPWIATRCTNESVKPVGENDVVEMTIDQNESVLPPLDMRLAPSDLVIADTASTMDSLRMLPVY LRTYALEQMVQQASSIAGIRTIKRVEQTLHDLEINLKPKVPTKAVCAEHLELRKEILTLLNLQKQLQYIEAEGSSAREGAQYEMPGTPKRLVRDHDRAFI PDMMGFGGERGGRKDQKRKGPGRVSERLSSPANKWPRKMKAVTFSEKQESFDGDNKVQRSWFHGQDFYEYDPREMEYSAAIAAAAFAISSTEEAEADRLR KIKVDSQRSMGRVRSFKEVSITRLGSFRSLSIKEDRDPGESSNRTQENQDQRVQQQESGFLAKRPSLSSSTMRPEQGKQYQRSYSTRREADFAGPDSWET AQLRKISKRYEKMKSKVIAWEEAKKMKAKLHMERKRNEMELRTTRNMQHYQSKLVRIDMIASGVMEQLDEKRRKEEAEVKEKVRHGGSKAHGSSKNSCFW WN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47210	MYB		myb-like transcription factor ...		Lus10021650 [exp]	0	1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10004058 [exp]	3.2	0.7644
					Lus10008068 [exp]	3.9	0.7686
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	4.0	0.7931
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	9.5	0.7706
AT3G09890			Ankyrin repeat family protein ...		Lus10021508 [exp]	11.0	0.7291
AT5G22120			unknown protein		Lus10004788 [exp]	11.0	0.7526
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	21.7	0.7680
AT4G24630			DHHC-type zinc finger family p...		Lus10033527 [exp]	24.5	0.7301
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10013138 [exp]	26.5	0.7271
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10019129 [exp]	30.7	0.7190

Compare expression of checked genes

Lus10021650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.