Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07830 707 / 0 ATGUS2 glucuronidase 2 (.1) AT5G61250 684 / 0 ATGUS1 glucuronidase 1 (.1.2) AT5G34940 496 / 2e-171 ATGUS3 glucuronidase 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034707 [exp] 1001 / 0 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10015737 [exp] 849 / 0 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 828 / 0 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 526 / 0 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10008823 [exp] 514 / 3e-178 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10037110 [exp] 511 / 1e-177 AT5G07830 528 / 0.0 glucuronidase 2 (.1) Lus10004664 [exp] 507 / 5e-176 AT5G07830 519 / 0.0 glucuronidase 2 (.1) Lus10038109 [exp] 496 / 9e-172 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 484 / 4e-167 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G049100 [exp] 739 / 0 AT5G07830 731 / 0.0 glucuronidase 2 (.1) Potri.010G160800 [exp] 563 / 0 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.018G121500 [exp] 505 / 3e-175 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.018G024200 [exp] 499 / 2e-172 AT5G34940 664 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 496 / 3e-171 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF03662 [flax] [poplar] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021652 pacid=23180273 polypeptide=Lus10021652 locus=Lus10021652.g ID=Lus10021652.BGIv1.0 annot-version=v1.0 ATGGGATTATGGGGTTTCTCGGTTATCCCTTTGGCTTTTCTCCACGTCATTGTAGCTCAAGAGATTATGACTGCCACAGTTGTGGTCAGTGGGGCTGCCA AAGTTGCTGAGACTGATGACAACTACGTGTGTGCTACATTAGATTGGTGGCCTCATGATAAGTGTGATTACAACCATTGTCCATGGGGATATACTTCCGC AGTAAATCTGGATGTGTCTCATCCTGTTCTTGGCAAAGCTATCCAAGCGTTCAGCCCATTGAGAATAAGGATTGGAGGGTCTTTGCAAGACCAAGTTCTG TATGATGTGGGAAATCTGGGTTCCAATTGCCATTCGTTTTTCAAGATGAAATGGGGACTTTTCGGGTTCTCGAAGGGATGTTTGCGCATGGATCGATGGG ATTCGCTCAACAACTTATTCAGCCGAACTGGAGCCATGGTGACATTCGGGTTGAATGCTCTCCGTGGTAGGCACAAGACGTGGGGTAAGCATTGGGGAGG ATCTTGGAACTCAACTAATACTTATGATTTCATCAGCTATACCATCTCAAAGGGACACAAGATTGACTCTTGGGAATATGGTAACGAATTGAGTGGAACT GGTATAGGTGCAAGCGTTAGTGTTGATACATATGCAAAAGATGTGATCAAACTCAGAGAAATTGTTGATACATTATACAAGAACTCGAAGAGGAAACCTT CGGTTATGGCACCGGGAGGATTTTTTGAGAAGGATTGGTATGCCAAGCTTCTCAAGATTACAGGTCCTGGAACAATCAACGTCGTCACTCATCATATATA CAACTTGGGTGCAGGTGTTGATCCACACCTCATCCAGCACATTATGGATCCAAACTATTTGAGCAAGGTGTCAAAGACATTCGGTAACCTTTCACAAACA ATACAACAGAATGGACCGTGGGCTTCAGCTTGGGTTGGCGAGTCAGGTGGTGCTTACAACAGTGGCGGTTTTCATATATCTGATACGTTTGTGAACAGCT TCTGGTACTTGGATCAGCTTGGTTTGGCAGCTACATACAATACAAAAGTCTACTGCAGGCAGACTCTAGTAGGTGGACACTATAGTTTACTCAACACTAC GACATTTGTCCAAAATCCTGATTACTACAGTGCCCTTCTATGGCATAGATTGATGGGGAAAATTGTTCTAGGCGTCACCAGCACTGCTTCACCTTATCTA CGCTATTATGCGCATTGCTCCAGAGGCAGACAAGGCATCACAGTACTGCTAATCAACCTTAGCAACAGCACACGATTCATAGTCAACATAAGAAGCAGCT CCAGCTTGGCGCTGGACCTGAAAGCAAGGGAACCGGGAACCAAAAGTTCCTTCATCGACAGCCTCAAGAGGTCGGTTTCGTGGATAGGAAGCGAAGCAAC AGAAGGGTCATTGTTCAGAGAAGAGTACCATCTGAGTCCAAAAGATGGGGACCTTAGAAGCAAGACAATGCTTCTAAATGGGAACCCAATACAAGTTACA GAGAAGGGAGACATCCCAAAGCTTGAACCAATGCGTTACAAATTGAGTTCTCCACTATATATAAGCTCGTCCTCAATGTCATTCGTAGTGCTGCCTAATT TTGGTGCTCCTGCTTGTGCCTAA
AA sequence Show only first row Show all	>Lus10021652 pacid=23180273 polypeptide=Lus10021652 locus=Lus10021652.g ID=Lus10021652.BGIv1.0 annot-version=v1.0 MGLWGFSVIPLAFLHVIVAQEIMTATVVVSGAAKVAETDDNYVCATLDWWPHDKCDYNHCPWGYTSAVNLDVSHPVLGKAIQAFSPLRIRIGGSLQDQVL YDVGNLGSNCHSFFKMKWGLFGFSKGCLRMDRWDSLNNLFSRTGAMVTFGLNALRGRHKTWGKHWGGSWNSTNTYDFISYTISKGHKIDSWEYGNELSGT GIGASVSVDTYAKDVIKLREIVDTLYKNSKRKPSVMAPGGFFEKDWYAKLLKITGPGTINVVTHHIYNLGAGVDPHLIQHIMDPNYLSKVSKTFGNLSQT IQQNGPWASAWVGESGGAYNSGGFHISDTFVNSFWYLDQLGLAATYNTKVYCRQTLVGGHYSLLNTTTFVQNPDYYSALLWHRLMGKIVLGVTSTASPYL RYYAHCSRGRQGITVLLINLSNSTRFIVNIRSSSSLALDLKAREPGTKSSFIDSLKRSVSWIGSEATEGSLFREEYHLSPKDGDLRSKTMLLNGNPIQVT EKGDIPKLEPMRYKLSSPLYISSSSMSFVVLPNFGAPACA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	0	1
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10017751 [exp]	1.7	0.7834
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Lus10004497 [exp]	3.7	0.6855
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10006581 [exp]	4.0	0.7733
AT2G30350			Excinuclease ABC, C subunit, N...		Lus10042228 [exp]	4.2	0.7063
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	6.7	0.7392
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10033896 [exp]	7.4	0.6952
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Lus10031929 [exp]	8.0	0.7126
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	10.7	0.7233
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	11.1	0.7366
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10036503 [exp]	12.5	0.6877

Compare expression of checked genes

Lus10021652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.