Plant FIBer expression Database

Lus10021653 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G61220 105 / 4e-31 LYR family of Fe/S cluster biogenesis protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034706
[exp]
184 / 4e-62 AT5G61220 104 / 5e-31 LYR family of Fe/S cluster biogenesis protein (.1)
Lus10003467
[exp]
168 / 6e-56 AT5G61220 104 / 6e-31 LYR family of Fe/S cluster biogenesis protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G079800
[exp]
148 / 3e-48 AT5G61220 97 / 7e-28 LYR family of Fe/S cluster biogenesis protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0491 LYR-like PF05347 Complex1_LYR Complex 1 protein (LYR family)
Representative CDS sequence
>Lus10021653 pacid=23180345 polypeptide=Lus10021653 locus=Lus10021653.g ID=Lus10021653.BGIv1.0 annot-version=v1.0
ATGGCGTCGACCAGAAGCGTATCAAGAGGCGAAATACTCTCCCTTTACCGTTCCCTCCTGCGCACAGCTCGCCAGTTTAGCGACTACAACATCCGGGAGT
ACGCCAAGCGGCGTACGGTCGATGGCTTCCGGCAGAACCAAGGTTTAACGGACTCCGTTTCCGTTTCCGCCGCATACTCGGACGGGAAGTCTCAACTCGA
AGTCGCCAAGAGACAGGCTGTCGTGTACTCTCTCTACGCCCCTAAAATCAAGAGCGTGATGGAGACCGACTTGAAAGGCAAGCGCTGA
AA sequence
>Lus10021653 pacid=23180345 polypeptide=Lus10021653 locus=Lus10021653.g ID=Lus10021653.BGIv1.0 annot-version=v1.0
MASTRSVSRGEILSLYRSLLRTARQFSDYNIREYAKRRTVDGFRQNQGLTDSVSVSAAYSDGKSQLEVAKRQAVVYSLYAPKIKSVMETDLKGKR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G61220 LYR family of Fe/S cluster bio... Lus10021653
[exp]
0 1
AT1G07070 Ribosomal protein L35Ae family... Lus10021121
[exp]
4.5 0.8350
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10021405
[exp]
7.3 0.8321
AT1G76860 Small nuclear ribonucleoprotei... Lus10011293
[exp]
7.9 0.8264
AT1G76860 Small nuclear ribonucleoprotei... Lus10040487
[exp]
20.7 0.8087
AT2G47640 Small nuclear ribonucleoprotei... Lus10013840
[exp]
25.1 0.7758
AT5G20850 ATRAD51 RAS associated with diabetes p... Lus10027654
[exp]
27.5 0.8179
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Lus10025058
[exp]
29.2 0.7980
AT1G78650 POLD3 DNA-directed DNA polymerases (... Lus10013748
[exp]
31.6 0.7955
AT3G18880 Nucleic acid-binding, OB-fold-... Lus10017467
[exp]
31.6 0.7914
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Lus10033951
[exp]
34.1 0.8049

Lus10021653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.