Plant FIBer expression Database

Lus10021655 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G51980 125 / 4e-32 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2)
AT4G25440 125 / 4e-32 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1)
AT5G49200 101 / 1e-23 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1)
AT5G40880 95 / 3e-21 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021648
[exp]
525 / 0 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1)
Lus10021656
[exp]
404 / 5e-139 AT4G25440 329 / 9e-109 zinc finger WD40 repeat protein 1 (.1)
Lus10034716
[exp]
287 / 4e-95 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10021640
[exp]
257 / 3e-85 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1)
Lus10001652
[exp]
233 / 9e-76 AT5G51980 192 / 2e-59 Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10032066
[exp]
235 / 9e-74 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1)
Lus10032062
[exp]
218 / 3e-68 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1)
Lus10014595
[exp]
216 / 9e-64 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2)
Lus10014598
[exp]
164 / 6e-48 AT4G25440 134 / 2e-36 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G077800
[exp]
136 / 1e-35 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.012G134800
[exp]
129 / 1e-33 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1)
Potri.015G137200
[exp]
127 / 1e-32 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
Representative CDS sequence
>Lus10021655 pacid=23180355 polypeptide=Lus10021655 locus=Lus10021655.g ID=Lus10021655.BGIv1.0 annot-version=v1.0
ATGTATCGACGCGGGGTTTCTGGACATGATCAGAAGAATAGTCGGACCGTTTGTCGATTCTGGAAAGTGGGAAAGTGCACTCATCAACCCTGCAGATACT
TCCACGGTGAATCTCCTTCTGCGGCCCCGTCTCCATCACCGTACCGTCGTTCTAACGTCTATAATCGAGGAGGATCTCAGTACTCGTCACAGCAGCCTCG
TTCGAATGTCTACATTCGACCATCTCCATCAAAACCGCCGCCGTCTACTCCTGTGGACAGCCGCCAAAGAGATTCACCCAAACAGGCTACTCTCCAAAAA
CCCAACAACGTTTCTGATGAGAAGATCATCTTGATCGCTGAAGATGATAAAAAGAAGAGCGAAGAAGAGACTATATGTGGAGAGGTTCAAGGGCATGGTA
GTTCGGTTGTTTCAGGGCTCTCTCTTGCTTCTGAGGTTTCTAAGCTTTTCTGTGGAACCAGTGATGGGGTTCTGCAATCATGGAATTCCGTAACTGGTGA
CGTTGTGGGGTCACTGAATGTTGGTGGGAAGATTGGGTGTGCTCAACACATTCTCGCAGGCCTAGTTGGCCAAGTTCACGCATTGACTGTTGACTATGAG
ATGGCGATTGTGTTTGCTGCCGCTGAAGATCGTATCATTTGGGCGTGGAAGGATAATACCACCGAGCACGGAGATATTTTTACGGATGGTAGAACTTCTC
AATGCATACAAACATTAAAGGGGCATGATGATGCAGTGACGTGTCTCCTCTGCTATAGATGCTACTTGTTGTCCTGCTCACTGGATAAGAAGATAAAAGT
ATGGGGTCACAATAAAGAAAGAAGACTGGAAGTTGAATATACCCATGAAGAAGCAGATGGTGGTCTAGCTTTGTGTGGAATAGAAGAGTGTGGGAAAGAG
ATGTTGTTGTGCTCTTGGAACAATGATTCGGTTGGGTTGTATGAGCTTCCATCATTTGTTGAGAAAGGGAGAATGTACATGAAATGTGAAGTAAGGAGCT
TGGGGGGAGGTACTAGAGGGATGTTCTTCAGTGGAGATGCTTCTGGTGTGGTGACTGTATGGAAACTTGCAGAAGAAGCAAAAAATGGAGCAGTAGAAGT
AGTAGTTTGA
AA sequence
>Lus10021655 pacid=23180355 polypeptide=Lus10021655 locus=Lus10021655.g ID=Lus10021655.BGIv1.0 annot-version=v1.0
MYRRGVSGHDQKNSRTVCRFWKVGKCTHQPCRYFHGESPSAAPSPSPYRRSNVYNRGGSQYSSQQPRSNVYIRPSPSKPPPSTPVDSRQRDSPKQATLQK
PNNVSDEKIILIAEDDKKKSEEETICGEVQGHGSSVVSGLSLASEVSKLFCGTSDGVLQSWNSVTGDVVGSLNVGGKIGCAQHILAGLVGQVHALTVDYE
MAIVFAAAEDRIIWAWKDNTTEHGDIFTDGRTSQCIQTLKGHDDAVTCLLCYRCYLLSCSLDKKIKVWGHNKERRLEVEYTHEEADGGLALCGIEECGKE
MLLCSWNNDSVGLYELPSFVEKGRMYMKCEVRSLGGGTRGMFFSGDASGVVTVWKLAEEAKNGAVEVVV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G25440 C3HZnF ZFWD1 zinc finger WD40 repeat protei... Lus10021655
[exp]
0 1
AT5G17230 PSY PHYTOENE SYNTHASE (.1.2.3) Lus10029809
[exp]
3.2 0.8815
AT5G60750 CAAX amino terminal protease f... Lus10032326
[exp]
3.5 0.8773
AT1G14690 MAP65-7 microtubule-associated protein... Lus10035098
[exp]
3.9 0.8729
AT5G55470 ATNHX3 Na+/H+ \(sodium hydrogen\) exc... Lus10016583
[exp]
4.6 0.8357
AT3G08690 ATUBC11, UBC11 ubiquitin-conjugating enzyme 1... Lus10007126
[exp]
5.3 0.8688
AT1G76890 Trihelix AT-GT2, GT2 Duplicated homeodomain-like su... Lus10020873
[exp]
6.2 0.8438
AT1G28220 ATPUP3 purine permease 3 (.1) Lus10036465
[exp]
7.5 0.8513
Lus10025936
[exp]
8.1 0.8213
AT1G30910 Molybdenum cofactor sulfurase ... Lus10018692
[exp]
8.2 0.8416
AT2G01818 PLATZ transcription factor fam... Lus10030763
[exp]
8.3 0.8296

Lus10021655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.