Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25440 253 / 3e-79 C3HZnF ZFWD1 zinc finger WD40 repeat protein 1 (.1) AT5G51980 251 / 3e-78 C3HZnF Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G49200 216 / 3e-65 C3HZnF WD-40 repeat family protein / zfwd4 protein (ZFWD4) (.1) AT5G40880 201 / 1e-58 WD-40 repeat family protein / zfwd3 protein (ZFWD3) (.1) AT3G51930 59 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G47610 54 / 8e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G21040 52 / 5e-07 FBX2 F-box protein 2 (.1.2) AT5G50120 52 / 6e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT1G24530 50 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 47 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021648 [exp] 604 / 0 AT4G25440 321 / 1e-105 zinc finger WD40 repeat protein 1 (.1) Lus10032066 [exp] 415 / 5e-142 AT4G25440 343 / 5e-115 zinc finger WD40 repeat protein 1 (.1) Lus10021655 [exp] 336 / 5e-112 AT4G25440 169 / 3e-48 zinc finger WD40 repeat protein 1 (.1) Lus10033255 [exp] 321 / 1e-104 AT5G51980 285 / 3e-91 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10014595 [exp] 322 / 6e-102 AT5G14250 445 / 3e-150 FUSCA 11, COP9 SIGNALOSOME SUBUNIT 3, CONSTITUTIVE PHOTOMORPHOGENIC 13, Proteasome component (PCI) domain protein (.1), Proteasome component (PCI) domain protein (.2) Lus10034716 [exp] 302 / 3e-99 AT5G51980 217 / 5e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10038890 [exp] 258 / 7e-82 AT5G51980 551 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021640 [exp] 249 / 1e-80 AT4G25440 185 / 7e-57 zinc finger WD40 repeat protein 1 (.1) Lus10032062 [exp] 237 / 6e-74 AT4G25440 212 / 3e-65 zinc finger WD40 repeat protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G134800 [exp] 258 / 6e-81 AT4G25440 600 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.015G137200 [exp] 252 / 2e-78 AT4G25440 587 / 0.0 zinc finger WD40 repeat protein 1 (.1) Potri.014G077800 [exp] 241 / 4e-73 AT5G51980 391 / 5e-132 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G202700 [exp] 52 / 6e-07 AT3G51930 531 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G022900 [exp] 51 / 1e-06 AT3G51930 523 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G109500 [exp] 49 / 6e-06 AT3G18950 555 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G157900 [exp] 47 / 3e-05 AT5G21040 670 / 0.0 F-box protein 2 (.1.2) Potri.004G148400 [exp] 46 / 6e-05 AT3G18950 539 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G050900 [exp] 45 / 6e-05 AT1G24530 483 / 5e-170 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G076000 [exp] 45 / 9e-05 AT5G50120 417 / 5e-145 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10021656 pacid=23180328 polypeptide=Lus10021656 locus=Lus10021656.g ID=Lus10021656.BGIv1.0 annot-version=v1.0 ATGGTGTTCAAATCAAATGTGTTCGATCGACTTGGGGTCTCTAGACATGATCAGAAGAATAGTCGGGTCATTTGTCGATTCTGGAAACTGGGAAAGTGCA CTCATCAACCCTGTAGGTTCGTACACGGAGAATCTCCTTCTGCGGCGCCGTCTCCATCACCCTACCGTCGTTCTAACGTCTATAATCGAGGATCTCAGTA CTCGTCACAGCAGCCTCGTTCCAATGTCTACATTCGACAATCTCGATCAAAACCACCTCCGTCTACTCCTGTGGATAGCTGCCGAAGAGATTCGCCCAAA CGCGCTACTCTTCAAAAACCCAACAATGTTTCTGACGGGAAGATCATCTTGACCACTGAAGATGATCAGAAGAAGAGCGAAGAGACCAATTCACCCAAAC ACGCTACTCTTCAGAAATCCAACAATGTTTCTGATGAGAAGATCATCTTGATCGCTGATGATGATCAAAAGAAGAGCAAAGAAGAGACTATCTGTGGAGA GTGGAAGTCGGGGAATTGCCCGAGAGGTGATAAGTGCCAGTTTTTACACTCTTGGTCTCGTGGAGATGGGTTCTCCATGCTTGGAAGGCTGCCAGGGCAT GGTAGTTCGGCTGTTTCAGGGCTCTCTCTTTCTTCTGCGATTTCTAGGCTTTACTGTGGGAGCATTGATGGGATTCTTCAAGCATGGGATTGTACCAGTG GTGAAGTTGTAGGGTCAATGAACGTTGGTGGGAAGATTAAGTGTATGGTAACTGATGGTGATTGGCTATATGTTGGATTGCAAAATATGGGTAAGGCATG GAACGTTCACTCAGGTGCTCAGCACATTCTCGAAGGCCCAGTTGGCCAAGTTCACGCATTGCACATTGGGATCAGTAATGTGTTTGCTGCCGCTGAAGAT GGTGTGATTTGGGGTTGGAAGACTAGTGCCGACCAGAAAGGAAATCTTTTCCAGCCAGCTCTATCACTGATTGGACATACAAGTGCAGTTATTTCCCTGA GATCTGGAGCAGGTAGGCTGTTTTCAGGCTCCATAGATGGAACCATCAAAGTCTGGGATGGAAGCACTTTCCAATGCACACAAACATTAAAGGGGCATGA TGATGCAGTGACGTCTCTCCTATGCTATAGCGAGTACCTGTTGTCCTGCTCATTGGATAAGAAGATCAAAGTATGGGGTTCCAACAAAGAAGGAAGGCTT GAAGTTGTATATACCCATGAAGAAGCAGTTGGTGCTCTGGCTTTGTGTGGAATCGGAGCGTGTGGGAAGGATATGTTGTTGTGCTCTTGGAACAACGATT CAGTTGGAATGTATGAGCTTCCATCATTTGCTGAGAAGGGGAGAATGTACTCGAAATGTGAAGTAAGGAGCTTTGGAGTAGGTACTGGAGGGATGTTCTT CACTGGAGATGCTTCTGGTGTGGTGACTGTATGGAACCTTGCAGAAGAAGAGAAAATGGAGCGGTAG
AA sequence Show only first row Show all	>Lus10021656 pacid=23180328 polypeptide=Lus10021656 locus=Lus10021656.g ID=Lus10021656.BGIv1.0 annot-version=v1.0 MVFKSNVFDRLGVSRHDQKNSRVICRFWKLGKCTHQPCRFVHGESPSAAPSPSPYRRSNVYNRGSQYSSQQPRSNVYIRQSRSKPPPSTPVDSCRRDSPK RATLQKPNNVSDGKIILTTEDDQKKSEETNSPKHATLQKSNNVSDEKIILIADDDQKKSKEETICGEWKSGNCPRGDKCQFLHSWSRGDGFSMLGRLPGH GSSAVSGLSLSSAISRLYCGSIDGILQAWDCTSGEVVGSMNVGGKIKCMVTDGDWLYVGLQNMGKAWNVHSGAQHILEGPVGQVHALHIGISNVFAAAED GVIWGWKTSADQKGNLFQPALSLIGHTSAVISLRSGAGRLFSGSIDGTIKVWDGSTFQCTQTLKGHDDAVTSLLCYSEYLLSCSLDKKIKVWGSNKEGRL EVVYTHEEAVGALALCGIGACGKDMLLCSWNNDSVGMYELPSFAEKGRMYSKCEVRSFGVGTGGMFFTGDASGVVTVWNLAEEEKMER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021656 [exp]	0	1
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	2.0	0.8525
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	6.3	0.8065
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	8.8	0.7901
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	11.8	0.7920
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10022797 [exp]	12.8	0.7954
AT3G50910			unknown protein		Lus10014290 [exp]	13.1	0.7926
					Lus10001494 [exp]	14.1	0.7613
AT5G52530			dentin sialophosphoprotein-rel...		Lus10014955 [exp]	14.4	0.7861
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	14.8	0.7660
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Lus10039575 [exp]	16.8	0.7919

Compare expression of checked genes

Lus10021656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.