Plant FIBer expression Database

Lus10021658 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18700 623 / 0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001649
[exp]
1162 / 0 AT1G18700 718 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4)
Lus10017263
[exp]
42 / 0.0004 AT4G36040 106 / 2e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G112200
[exp]
816 / 0 AT1G18700 746 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4)
Potri.004G102875
[exp]
50 / 8e-08 AT1G18700 50 / 9e-09 DNAJ heat shock N-terminal domain-containing protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10021658 pacid=23180325 polypeptide=Lus10021658 locus=Lus10021658.g ID=Lus10021658.BGIv1.0 annot-version=v1.0
ATGGCCGGCGACGAAACTAACCCGCCGACCTCGTCAATGGCGTCCAGGAACAAAGCCTACGCTTTGCCTCTTCTTCTTTTCTCCCTTTCGCTCTTCTATC
AGCTTGCTGTTCTTCCCAACTCTTTCCCGCCTTCCCACTACGACGTGTTGGGGATCAAACGGTTTAGCTCAGCCGAAGAAGCGAAGGTTGCTTACGAGAG
CCTCTATTCCAAGTGGAAATCTGGCGAGGAGGTTCCTACTATTTTTTATTTTCTCAAGGTCCAATATGCTTTTGAGTTGCTGAAGAACCCCATATGGAAA
AGGGATTATGACTTGTTTGGCATTGATGAACAACTCGACCTTCTTGAGAAGGCTAAAGTTCAATATGCAGAATTAGGCTTTTCAAATGTAGACCTTCCGT
TGCTTGATGATACTTCTTCTGTAGTTTCCCCACATTTCATTATTTTCTTTTGTATCCAGGTGTATTCCAAAGGAAGCAACCGTTGTGCTAAATTTCTTGA
AGCATGGAAGCGAATTGCTGCTTTTCTGGATGGAACTGCTAATATTGGCGCAGTGGAAGTTGGTGACATGGAAGTTGCCGCATCATTTGCTGAGACAAAG
CCAACAGGGCAGTTTTTCTTCAGAAATGGTCTCCCTTCCCTCGTTGCTCTCCCGTCGGGCTGTCGAAGTTCAAAATGTCTTGTGAGGTTTGATGGTGATC
TATCTGTCGATGCTGTCACGGATTGGTTTGCAACTTCTGTACTAGGCTTACCACGAATTTTGTACTATTCGAAGGAAGCACTAGCACAGAACTTCATGGC
AAAGAGTGGTCCCCATAAGGTGAAAGTAATTTTTTTCTCTAAAACAGGAGAGCGTGCTGCTCCATTTGTTCGCCAAGCTGCTAAAGACTACTGGGCACAT
GCGTCTTTTGCATTTGTCTTATGGCGTGAAGAAGATTTTTCCTTTTGGTGGAATTCGTTTGAGGTTGAATCTGCCCCAGCTGTTGTCTTTATTAAAGATC
CAGGTCTTAAACCCCTGGTCTTTCATGGTTCTCTCAACAATTCATTGCTTCTGGATCTAATGGAAAGAAATAAAGAGCATGAACTTCCACAGCTAAGAAG
CGCAACATCTATGAACCTTGGTTGTGATGCCCGTGGATACTCTCGAGCTGGAAGTGATACTATATCATGGGTGAAAGAACTGGATGTTGATAAAGAGCTA
ACTTCAGCGTTGGTAACTGCAATGGAAAGTAAGCGGTTGACGTTTGCATGGCTTGATGGAGAAGCTCAAGAGAAATATTGTTCGTTCTACCTTCATTCAG
AAACCAGCTATGACACTTGTGGACCTAGGAGGGATATGGCTGACGTACCTAGATTATTTCTAGTACGTTACAAAAGGAATGATACTGAAGCTAGTATTGA
GGCTGAAAAAACTCGAAAGAACCAATGGCATGCTCTACTACATGAGGAAGTGGATCCTGCGTCACAGCTGGTCGCTCGATACAATGGTTCGAGTGAGATC
CCAGAGATCATCAAGTGGATCTCTCAAACAATAAGTGATGGTGAATCCAGGGATCTCCCTTTCTATAGAACCAGAACCCCTGAGCTTGTACCTGAGGATT
CGGAACCCATGTGGTCAAGAGGTGCCCAAACTGTTCTTTCAAAAGGCATTGGGATCAAGCATAGCTTCCGAAGAGTCATGAGCAGAGTTTCAGATCACTT
TGGAGATCCAAGGATAGGACCAATGCTACTACTGGGAGCTCTAATGTCTTTCGGGACTATATGGTTGAGCAGGAGCCAGAGCAAGCCAAAACCTAAAACT
CAACCAGGTCAACAGAATGAATCGACAAAAAAGGATGAAGCTGGAACTAGGCGGAGAGAACGATCAAGAAACGCGTCGAGGAAAGATCAACCACCCTCCA
TGACTGACACGGTGCCCAAAGATGCTTACGAGATGCCATTCTCAGATTCTGACTCAGAGTAG
AA sequence
>Lus10021658 pacid=23180325 polypeptide=Lus10021658 locus=Lus10021658.g ID=Lus10021658.BGIv1.0 annot-version=v1.0
MAGDETNPPTSSMASRNKAYALPLLLFSLSLFYQLAVLPNSFPPSHYDVLGIKRFSSAEEAKVAYESLYSKWKSGEEVPTIFYFLKVQYAFELLKNPIWK
RDYDLFGIDEQLDLLEKAKVQYAELGFSNVDLPLLDDTSSVVSPHFIIFFCIQVYSKGSNRCAKFLEAWKRIAAFLDGTANIGAVEVGDMEVAASFAETK
PTGQFFFRNGLPSLVALPSGCRSSKCLVRFDGDLSVDAVTDWFATSVLGLPRILYYSKEALAQNFMAKSGPHKVKVIFFSKTGERAAPFVRQAAKDYWAH
ASFAFVLWREEDFSFWWNSFEVESAPAVVFIKDPGLKPLVFHGSLNNSLLLDLMERNKEHELPQLRSATSMNLGCDARGYSRAGSDTISWVKELDVDKEL
TSALVTAMESKRLTFAWLDGEAQEKYCSFYLHSETSYDTCGPRRDMADVPRLFLVRYKRNDTEASIEAEKTRKNQWHALLHEEVDPASQLVARYNGSSEI
PEIIKWISQTISDGESRDLPFYRTRTPELVPEDSEPMWSRGAQTVLSKGIGIKHSFRRVMSRVSDHFGDPRIGPMLLLGALMSFGTIWLSRSQSKPKPKT
QPGQQNESTKKDEAGTRRRERSRNASRKDQPPSMTDTVPKDAYEMPFSDSDSE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G18700 DNAJ heat shock N-terminal dom... Lus10021658
[exp]
0 1
AT2G31955 CNX2 cofactor of nitrate reductase ... Lus10008908
[exp]
5.7 0.8093
AT3G52640 Zn-dependent exopeptidases sup... Lus10007387
[exp]
14.8 0.8416
AT5G60230 ATSEN2, SEN2 splicing endonuclease 2 (.1.2) Lus10006218
[exp]
19.0 0.7781
AT1G09060 Zinc finger, RING-type;Transcr... Lus10037812
[exp]
19.1 0.8193
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Lus10038623
[exp]
28.3 0.7848
AT4G31340 myosin heavy chain-related (.1... Lus10020166
[exp]
28.7 0.7336
AT3G52780 ATPAP20, PAP20 Purple acid phosphatases super... Lus10017057
[exp]
33.0 0.7220
AT1G06110 SKIP16 SKP1/ASK-interacting protein 1... Lus10004805
[exp]
42.3 0.7879
AT4G29490 Metallopeptidase M24 family pr... Lus10032694
[exp]
45.3 0.7768
AT3G20920 translocation protein-related ... Lus10014906
[exp]
45.4 0.7787

Lus10021658 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.