Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61430 336 / 7e-115 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT5G07680 328 / 9e-112 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT5G39610 296 / 7e-100 NAC ORE1, AtNAC2, ANAC092, ATNAC6 ORESARA 1, NAC domain containing protein 2, Arabidopsis NAC domain containing protein 92, NAC domain containing protein 6 (.1) AT3G29035 285 / 6e-95 NAC ORS1, AtNAC3, ANAC059 ORE1 SISTER1, Arabidopsis NAC domain containing protein 59, NAC domain containing protein 3 (.1) AT3G04060 273 / 3e-90 NAC ANAC046 NAC domain containing protein 46 (.1) AT5G18270 265 / 3e-87 NAC ANAC087 Arabidopsis NAC domain containing protein 87 (.1.2) AT5G53950 265 / 3e-86 NAC ATCUC2, CUC2, ANAC098 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G15170 258 / 2e-84 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 253 / 2e-82 NAC ANAC058 NAC domain containing protein 58 (.1) AT2G24430 239 / 2e-77 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001648 [exp] 558 / 0 AT5G61430 359 / 4e-124 NAC domain containing protein 100 (.1) Lus10005537 [exp] 267 / 5e-88 AT5G53950 317 / 3e-107 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10026879 [exp] 261 / 5e-85 AT5G18270 325 / 3e-110 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10003435 [exp] 258 / 9e-84 AT5G18270 315 / 2e-106 Arabidopsis NAC domain containing protein 87 (.1.2) Lus10020165 [exp] 251 / 1e-80 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10009029 [exp] 248 / 4e-80 AT3G18400 311 / 3e-105 NAC domain containing protein 58 (.1) Lus10041924 [exp] 241 / 1e-79 AT5G53950 281 / 9e-95 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10009669 [exp] 246 / 3e-79 AT3G18400 308 / 3e-104 NAC domain containing protein 58 (.1) Lus10026966 [exp] 244 / 2e-78 AT2G24430 311 / 6e-105 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G001400 [exp] 351 / 2e-120 AT5G61430 448 / 1e-158 NAC domain containing protein 100 (.1) Potri.015G020000 [exp] 349 / 1e-119 AT5G61430 446 / 1e-157 NAC domain containing protein 100 (.1) Potri.017G086200 [exp] 316 / 6e-107 AT5G61430 386 / 2e-134 NAC domain containing protein 100 (.1) Potri.019G031600 [exp] 289 / 1e-95 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.013G054200 [exp] 275 / 2e-90 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.001G396300 [exp] 259 / 5e-85 AT5G53950 299 / 5e-100 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G115400 [exp] 260 / 8e-85 AT5G53950 312 / 1e-104 CUP-SHAPED COTYLEDON 2, Arabidopsis NAC domain containing protein 98, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.018G003800 [exp] 252 / 8e-82 AT2G24430 350 / 1e-120 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.015G046800 [exp] 250 / 2e-81 AT3G18400 326 / 1e-111 NAC domain containing protein 58 (.1) Potri.006G277000 [exp] 250 / 4e-81 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10021659 pacid=23180274 polypeptide=Lus10021659 locus=Lus10021659.g ID=Lus10021659.BGIv1.0 annot-version=v1.0 ATGGAAAACAACGTTGCGTGTGGAGTTGGGATGGTGATGGAGGAAGAAGATGACCAGATGGATTTGCCACCTGGGTTCCGTTTCCACCCTACTGATGAAG AGCTCATCTCCCATTATCTCTACAACAAGGTCATCGATGTCAGATTCTCCTGCAGAGCCATCGGCGACGTCGATTTGAACAAGTCTGAGCCCTGGGAACT TCCCTGGAAAGCGAAGATGGGGGAGAAAGAGTGGTACTTCTTCTGCGTTCGAGATAGGAAGTACCCAACTGGGCTGAGGACGAACAGAGCAACAGAAGCT GGGTACTGGAAGGCCACTGGGAAAGACAAGGAGATTTACAGAGGGAAATCTCTGGTTGGGATGAAGAAAACCTTGGTCTTCTACAAAGGAAGAGCACCCA AGGGGGAGAAATCTAACTGGGTTATGCACGAGTACAGACTAGACGGCAAATTCTCCATCCACAACCTCCCCAAAACCGCCAAGAATGAATGGGTGATATG CAGGGTGTTCCAGAAGACTTGCGGCGGGAAGAAGATTCACATCTCCGGAATCACACGATTCGGAGAGTTGCAGGGTCATCATCATAATTCTTCGTCCATG TTGCCGCCGTTGATGGAATCCCCTTCAGCTAATTACGATCAGAAATTTACAATTAAGCCAGCCGTAGCTGCAGAATCTTCTTCAGCTTACGTGCCCTGCT TCTCCAATCTCATTACCAACATGAACACAACCAACAATTCATCAACATCCTCCTCTCAATTTCTATCTAATCCAATAATTCCTTCATCATCCTCTTCTTC AATCCCTCTCTTCCCATCTTCTCATTACAATTCCCAGTTGATCCCTTCCGCTAATTTCGGCCAATACAACGACAACTCCATCCTACTCCGAGCTCTGATG GCGGATAAACAAGGAGGAGGAGGAGGGTCGTCGTTGAATCTGATGAACAGTACTGAGATTTCTCCGTCGGCGACTGGACCAGTGGATCTCGACTCTATTT GGGACTATTAA
AA sequence Show only first row Show all	>Lus10021659 pacid=23180274 polypeptide=Lus10021659 locus=Lus10021659.g ID=Lus10021659.BGIv1.0 annot-version=v1.0 MENNVACGVGMVMEEEDDQMDLPPGFRFHPTDEELISHYLYNKVIDVRFSCRAIGDVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEA GYWKATGKDKEIYRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLDGKFSIHNLPKTAKNEWVICRVFQKTCGGKKIHISGITRFGELQGHHHNSSSM LPPLMESPSANYDQKFTIKPAVAAESSSAYVPCFSNLITNMNTTNNSSTSSSQFLSNPIIPSSSSSSIPLFPSSHYNSQLIPSANFGQYNDNSILLRALM ADKQGGGGGSSLNLMNSTEISPSATGPVDLDSIWDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10021659 [exp]	0	1
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	4.1	0.9250
AT2G02870			Galactose oxidase/kelch repeat...		Lus10030489 [exp]	6.3	0.8869
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10030891 [exp]	9.5	0.9156
AT4G27880			Protein with RING/U-box and TR...		Lus10018110 [exp]	9.9	0.9080
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	13.4	0.9156
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10018324 [exp]	17.1	0.8856
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	17.1	0.9198
AT3G26890			unknown protein		Lus10031999 [exp]	20.6	0.9068
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10038827 [exp]	25.1	0.9072
AT5G24560		ATPP2-B12	phloem protein 2-B12 (.1)		Lus10008898 [exp]	25.8	0.9116

Compare expression of checked genes

Lus10021659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.