Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18720 174 / 3e-55 Protein of unknown function (DUF962) (.1) AT1G74440 171 / 7e-54 Protein of unknown function (DUF962) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021661 [exp] 214 / 6e-71 AT1G18720 242 / 8e-82 Protein of unknown function (DUF962) (.1) Lus10001646 [exp] 212 / 6e-70 AT1G18720 246 / 3e-83 Protein of unknown function (DUF962) (.1) Lus10030447 [exp] 172 / 1e-54 AT1G18720 256 / 2e-87 Protein of unknown function (DUF962) (.1) Lus10036771 [exp] 171 / 8e-54 AT1G18720 250 / 3e-85 Protein of unknown function (DUF962) (.1) Lus10001647 [exp] 161 / 3e-51 AT1G18720 62 / 7e-13 Protein of unknown function (DUF962) (.1) Lus10037158 [exp] 67 / 2e-14 AT1G18720 92 / 2e-24 Protein of unknown function (DUF962) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088800 [exp] 187 / 1e-60 AT1G18720 245 / 4e-83 Protein of unknown function (DUF962) (.1) Potri.010G166500 [exp] 173 / 6e-55 AT1G18720 251 / 2e-85 Protein of unknown function (DUF962) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06127 [flax] [poplar] DUF962 Protein of unknown function (DUF962)
Representative CDS sequence Show only first row Show all	>Lus10021660 pacid=23180291 polypeptide=Lus10021660 locus=Lus10021660.g ID=Lus10021660.BGIv1.0 annot-version=v1.0 ATGGGTACTAAGAAGACGAATCTTCTTGATCTGGAATCCCACTACGGCTTATACAGAGCATACCACTTGAACCCCATCAATATCATGATACACACCTTGT TCATTTGGCCAATCTTCTTCATCAACCTCATGCTTTTCCACTTCACTCCCCCCATCCTCTTCCTCCCCGAATTCCAGTTCCTGGGTCGACCACTGGTTCC AAATTTTGGGCTGGTTTTCATGCTGTGCCACGCCATGTTCTTCGCAGCATTGGATGTAAAGGCCGGATCTTTAGCCGCTTCCCTCTGCATTGCTTGCTGG GTTGGCGCCAGTCATGCTGCTGCCCACCTTGGCTTTTCCTTCATATGGAAGATCGCTCTAGTGGCACACACATTGGGCCGGATGACTCAGTTTACAGGCC ATTACGTGTTTGAGAAAAGGGTAAGGACAGCTATGGACAGCTTTGTTCAAGCCCCTCACACAGAGTATTTTGTGCTGCTTGAGGTACTTTACCAGTTATT CGGGTATGAGCCGTACCCGGGGTTTCAAGCAGGTGTGGAGGCTAAGACGGCGGCCGAACTCAAGAAATGGGAAGAGAATAACCAGACAAAGAAGGCTAAG AGATGTTAG
AA sequence Show only first row Show all	>Lus10021660 pacid=23180291 polypeptide=Lus10021660 locus=Lus10021660.g ID=Lus10021660.BGIv1.0 annot-version=v1.0 MGTKKTNLLDLESHYGLYRAYHLNPINIMIHTLFIWPIFFINLMLFHFTPPILFLPEFQFLGRPLVPNFGLVFMLCHAMFFAALDVKAGSLAASLCIACW VGASHAAAHLGFSFIWKIALVAHTLGRMTQFTGHYVFEKRVRTAMDSFVQAPHTEYFVLLEVLYQLFGYEPYPGFQAGVEAKTAAELKKWEENNQTKKAK RC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18720			Protein of unknown function (D...		Lus10021660 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	7.0	1.0000
AT5G64820			unknown protein		Lus10025572 [exp]	9.9	1.0000
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10017474 [exp]	12.1	1.0000
					Lus10038707 [exp]	14.0	1.0000
AT3G25040		ERD2B	endoplasmic reticulum retentio...		Lus10043149 [exp]	15.8	1.0000
AT1G47790			F-box and associated interacti...		Lus10042015 [exp]	16.4	1.0000
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	17.7	1.0000
					Lus10009719 [exp]	19.0	0.9992
					Lus10003763 [exp]	19.0	1.0000
					Lus10006079 [exp]	21.4	1.0000

Compare expression of checked genes

Lus10021660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.