Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18720 241 / 1e-81 Protein of unknown function (DUF962) (.1) AT1G74440 238 / 3e-80 Protein of unknown function (DUF962) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001646 [exp] 384 / 6e-138 AT1G18720 246 / 3e-83 Protein of unknown function (DUF962) (.1) Lus10030447 [exp] 223 / 3e-74 AT1G18720 256 / 2e-87 Protein of unknown function (DUF962) (.1) Lus10021660 [exp] 214 / 5e-71 AT1G18720 174 / 3e-55 Protein of unknown function (DUF962) (.1) Lus10036771 [exp] 211 / 7e-70 AT1G18720 250 / 3e-85 Protein of unknown function (DUF962) (.1) Lus10037158 [exp] 81 / 2e-19 AT1G18720 92 / 2e-24 Protein of unknown function (DUF962) (.1) Lus10001647 [exp] 76 / 6e-18 AT1G18720 62 / 7e-13 Protein of unknown function (DUF962) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G088800 [exp] 233 / 1e-78 AT1G18720 245 / 4e-83 Protein of unknown function (DUF962) (.1) Potri.010G166500 [exp] 218 / 1e-72 AT1G18720 251 / 2e-85 Protein of unknown function (DUF962) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06127 [flax] [poplar] DUF962 Protein of unknown function (DUF962)
Representative CDS sequence Show only first row Show all	>Lus10021661 pacid=23180309 polypeptide=Lus10021661 locus=Lus10021661.g ID=Lus10021661.BGIv1.0 annot-version=v1.0 ATGGGTAAGAAGTCAGGAATCTTGGACGTAGAGACCCATTTCGCCTTCTACGGAGCTTACCACGCCAATCCAATCAACATTCTGATCCACACCTTGTTCG TCTGGCCAATTTTCTTCACCACCCTCATGCTTTTCTACTACACTCCCTCATTCTTCGATTTCCCTCAATTTGGCTTCCTGGGTCAGCATCATCCTCTGGT TTTGAATTTCGGCTTCTTTTTCGCTCTCTTCTACACCGTCTTTTACTTGGTCTTGGATTTCAAAGCTGGTTGCGTGGCTGCTTTGCTCTGCTTTTCCTGC TGGGTTGGCTCCAGTTTCGTCTGTGCCTCCCTTGGCTCTTCTCTCGGTTGGAAGGTGGCAGCTGGGGTGCAGTTGTTTTGCTGGATAACACAGTTCATTG GCCATGGTGTGTTCGAGAAACGAGCTCCTGCTATACTTGACAACCTTGCTCAAGCGATCCTCACCGCACCATTTTTCGTATTGCTCGAGGTGCTTCATCA GCTATTCAATTACGAACCATATCCAGGGTTCCAGGAGAGTGTGAAGGCCAAGTCAGCAGTTGAGATCCAGAAGTGGAAAGAGATGAAGAAGCTAGCAAAA GAGTAA
AA sequence Show only first row Show all	>Lus10021661 pacid=23180309 polypeptide=Lus10021661 locus=Lus10021661.g ID=Lus10021661.BGIv1.0 annot-version=v1.0 MGKKSGILDVETHFAFYGAYHANPINILIHTLFVWPIFFTTLMLFYYTPSFFDFPQFGFLGQHHPLVLNFGFFFALFYTVFYLVLDFKAGCVAALLCFSC WVGSSFVCASLGSSLGWKVAAGVQLFCWITQFIGHGVFEKRAPAILDNLAQAILTAPFFVLLEVLHQLFNYEPYPGFQESVKAKSAVEIQKWKEMKKLAK E

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	0	1
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	3.0	0.8381
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	3.6	0.8217
					Lus10029394 [exp]	6.8	0.8458
AT4G25550			Cleavage/polyadenylation speci...		Lus10014987 [exp]	8.4	0.8330
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	9.5	0.8332
AT5G66240			Transducin/WD40 repeat-like su...		Lus10017157 [exp]	10.6	0.8194
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	11.3	0.8351
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10035444 [exp]	15.5	0.8023
AT2G43900			Endonuclease/exonuclease/phosp...		Lus10027073 [exp]	17.3	0.8000
AT3G18520		HDA15, ATHDA15	histone deacetylase 15 (.1.2)		Lus10022906 [exp]	21.2	0.8332

Compare expression of checked genes

Lus10021661 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.