Plant FIBer expression Database

Lus10021662 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18730 158 / 2e-49 PnsB4, NDF6 Photosynthetic NDH subcomplex B 4, NDH dependent flow 6 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001645
[exp]
281 / 3e-98 AT1G18730 182 / 3e-59 Photosynthetic NDH subcomplex B 4, NDH dependent flow 6 (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G068500
[exp]
171 / 2e-54 AT1G18730 184 / 4e-60 Photosynthetic NDH subcomplex B 4, NDH dependent flow 6 (.1.2.3.4)
PFAM info
Representative CDS sequence
>Lus10021662 pacid=23180290 polypeptide=Lus10021662 locus=Lus10021662.g ID=Lus10021662.BGIv1.0 annot-version=v1.0
ATGGCTGAAGCTATAATGGGGTTCACCGTTAACACAAGTCCAAGTTCAGGATCATCTGTGATAAAACGACAAAGAGTTTCATCATCGTTGTTGGGTAATC
AAGCTGTGCCGTGGCAGCAGCTTCAGGTAGATAAGAATAGAAGGGGAGGAAAAAGAAGCAGTAATGTGAGACTAAATGCAGTTCCAATTGATGGGGATCA
CTTGCAACTGATGGCAGTTCTAGTGCAGCATGGGGAAGGCCTCAGGGACTTCGTCACCGTCAAATCCATTTGGCACCTCAGTGATCAGGCCATCAAGAAC
GTTTATGTGTTCTACATCATGTTCTTCTGCTGGGGATGCTTGTTCTTCGGTTCAACCAAGGATCCATACTATGATTCGGATGCGTACAGGAAGGATGGAG
GAGATGGAACTGGACACTGGGTCTATGAGAAGCAAGAGGACATAGAGGAGCAAGCAAGAGCAGAGTTGTGGAGGGAAGAGCTGATTGAGGAAATTGAGAA
GAGGGTTGAAGAAGGACTCCCCGAGTTAGAAGAAGTCATCAGCGCCAGGAAATAG
AA sequence
>Lus10021662 pacid=23180290 polypeptide=Lus10021662 locus=Lus10021662.g ID=Lus10021662.BGIv1.0 annot-version=v1.0
MAEAIMGFTVNTSPSSGSSVIKRQRVSSSLLGNQAVPWQQLQVDKNRRGGKRSSNVRLNAVPIDGDHLQLMAVLVQHGEGLRDFVTVKSIWHLSDQAIKN
VYVFYIMFFCWGCLFFGSTKDPYYDSDAYRKDGGDGTGHWVYEKQEDIEEQARAELWREELIEEIEKRVEEGLPELEEVISARK

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G18730 PnsB4, NDF6 Photosynthetic NDH subcomplex... Lus10021662
[exp]
0 1
AT3G47070 unknown protein Lus10001204
[exp]
1.7 0.9742
AT1G64770 PnsB2, NDH45, N... Photosynthetic NDH subcomplex... Lus10010671
[exp]
2.0 0.9693
AT4G37925 NdhM, NDH-M NADH dehydrogenase-like comple... Lus10029728
[exp]
3.0 0.9651
AT4G37925 NdhM, NDH-M NADH dehydrogenase-like comple... Lus10029727
[exp]
3.9 0.9621
AT1G18730 PnsB4, NDF6 Photosynthetic NDH subcomplex... Lus10001645
[exp]
4.0 0.9625
AT2G23580 ATMES4, ABE4 ARABIDOPSIS THALIANA METHYL ES... Lus10005402
[exp]
4.9 0.9526
AT2G22780 PMDH1 peroxisomal NAD-malate dehydro... Lus10012459
[exp]
7.0 0.9495
AT2G47400 CP12-1 CP12 domain-containing protein... Lus10001453
[exp]
7.1 0.9471
AT1G66130 NAD(P)-binding Rossmann-fold s... Lus10002180
[exp]
8.1 0.9461
AT1G51400 Photosystem II 5 kD protein (.... Lus10014908
[exp]
8.5 0.9491

Lus10021662 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.