Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47470 414 / 4e-148 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 (.1) AT3G61470 218 / 6e-71 LHCA2 photosystem I light harvesting complex gene 2 (.1) AT1G45474 199 / 2e-63 LHCA5 photosystem I light harvesting complex gene 5 (.1.2) AT1G19150 198 / 5e-63 LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA2*1, LHCA6, LHCA2*1, LHCA2*1, LHCA2*1, LH photosystem I light harvesting complex gene 6 (.1) AT1G61520 145 / 3e-42 LHCA3*1, LHCA3*1, LHCA3*1 photosystem I light harvesting complex gene 3 (.1.2.3) AT3G54890 141 / 3e-41 LHCA1 photosystem I light harvesting complex gene 1 (.1.2.3.4) AT3G08940 110 / 1e-28 LHCB4.2 light harvesting complex photosystem II (.1.2) AT1G29920 107 / 6e-28 AB165, LHCB1.1, CAB2 LIGHT HARVESTING CHLOROPHYLL A/B-BINDING PROTEIN 1.1, chlorophyll A/B-binding protein 2 (.1) AT1G29910 107 / 6e-28 AB180, LHCB1.2, CAB3 LIGHT HARVESTING CHLOROPHYLL A/B BINDING PROTEIN 1.2, chlorophyll A/B binding protein 3 (.1) AT1G29930 107 / 6e-28 LHCB1.3, CAB140, CAB1 LIGHT-HARVESTING CHLOROPHYLL A/B-PROTEIN 1.3, CHLOROPHYLL A/B PROTEIN 140, chlorophyll A/B binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001644 [exp] 489 / 7e-178 AT3G47470 437 / 3e-157 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Lus10006416 [exp] 218 / 2e-70 AT3G61470 404 / 6e-144 photosystem I light harvesting complex gene 2 (.1) Lus10011361 [exp] 217 / 2e-70 AT3G61470 414 / 6e-148 photosystem I light harvesting complex gene 2 (.1) Lus10021730 [exp] 199 / 2e-63 AT1G45474 369 / 2e-130 photosystem I light harvesting complex gene 5 (.1.2) Lus10042657 [exp] 197 / 1e-62 AT1G45474 371 / 3e-131 photosystem I light harvesting complex gene 5 (.1.2) Lus10039912 [exp] 192 / 1e-60 AT1G19150 362 / 2e-127 photosystem I light harvesting complex gene 6 (.1) Lus10012297 [exp] 154 / 1e-45 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10016074 [exp] 154 / 1e-45 AT1G61520 474 / 2e-171 photosystem I light harvesting complex gene 3 (.1.2.3) Lus10040391 [exp] 145 / 2e-42 AT3G54890 371 / 1e-131 photosystem I light harvesting complex gene 1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G062200 [exp] 419 / 2e-150 AT3G47470 442 / 2e-159 light-harvesting chlorophyll-protein complex I subunit A4 (.1) Potri.001G056700 [exp] 219 / 3e-71 AT3G61470 410 / 3e-146 photosystem I light harvesting complex gene 2 (.1) Potri.003G171500 [exp] 216 / 5e-70 AT3G61470 409 / 5e-146 photosystem I light harvesting complex gene 2 (.1) Potri.006G139600 [exp] 204 / 2e-65 AT1G19150 393 / 1e-139 photosystem I light harvesting complex gene 6 (.1) Potri.014G029700 [exp] 184 / 2e-57 AT1G45474 306 / 3e-105 photosystem I light harvesting complex gene 5 (.1.2) Potri.014G172400 [exp] 150 / 2e-44 AT1G61520 362 / 3e-127 photosystem I light harvesting complex gene 3 (.1.2.3) Potri.008G041000 [exp] 146 / 5e-43 AT3G54890 395 / 4e-141 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.010G221100 [exp] 134 / 2e-38 AT3G54890 392 / 4e-140 photosystem I light harvesting complex gene 1 (.1.2.3.4) Potri.005G258600 [exp] 118 / 2e-31 AT1G76570 491 / 6e-176 Chlorophyll A-B binding family protein (.1) Potri.019G063101 [exp] 114 / 5e-30 AT4G10340 409 / 2e-145 light harvesting complex of photosystem II 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00504 [flax] [poplar] Chloroa_b-bind Chlorophyll A-B binding protein
Representative CDS sequence Show only first row Show all	>Lus10021663 pacid=23180258 polypeptide=Lus10021663 locus=Lus10021663.g ID=Lus10021663.BGIv1.0 annot-version=v1.0 ATGGCAACGGTGACAACCCAAGCTTCCGCCGCAGTGTTCCGGCCATGCACCGGAAGATCAAGGTTTCTCTCCGGGTCTCCGAGCAGCAGACTTGCCGTCA AACGTGTGGTGGGAGGCGCTTCTCGGCGGATCTCCTCTGCTTTCAAAGTTGAGGCCAAGAAGGGCGAGTGGTTGCCCGGCCTAGCTTCTCCCGGTTACCT CAACGGCAGTTTGCCAGGGGATAACGGGTTCGACCCACTGGGTTTGGCAGAGGACCCAGAGAACCTGAAATGGTTCGTGCAAGCGGAGCTGGTGAACGGG AGGTGGGCGATGCTAGGAGTCGCCGGCATGTTGTTGCCGGAGGTGTTCACCAAGATCGGGATCATCAACGTACCTGAATGGTACGACGCAGGGAAGCAGG AGTACTTCGCTTCTTCATCGACGCTGTTCGTTATCGAGTTCATACTATTCCATTACGTTGAGATCCGGAGGTGGCAGGACATCAAGAACCCTGGGAGCGT GAACCAGGACCCAATCTTCAAGCAGTACAGCTTGCCTCCTAACGAAGTCGGATACCCAGGTGGCATCTTCAACCCGCTTAACTTTAAAGCCACTGAGGAA GCCAAGGAGAAAGAAATCGCCAACGGGAGATTGGCGATGTTGGCGTTCCTGGGATTTGTGATTCAGCACAATGTGACAGGTAAAGGGCCATTTGAGAATC TGGCGCAGCACCTTGCGGACCCGTGGCACAACACCATTGTACAAACATTGTCTGGCAACTAG
AA sequence Show only first row Show all	>Lus10021663 pacid=23180258 polypeptide=Lus10021663 locus=Lus10021663.g ID=Lus10021663.BGIv1.0 annot-version=v1.0 MATVTTQASAAVFRPCTGRSRFLSGSPSSRLAVKRVVGGASRRISSAFKVEAKKGEWLPGLASPGYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELVNG RWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKQEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFKATEE AKEKEIANGRLAMLAFLGFVIQHNVTGKGPFENLAQHLADPWHNTIVQTLSGN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10021663 [exp]	0	1
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10012297 [exp]	1.4	0.9799
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10042219 [exp]	2.2	0.9503
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	2.8	0.9694
AT3G47470		CAB4, LHCA4	light-harvesting chlorophyll-p...		Lus10001644 [exp]	3.0	0.9625
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10037875 [exp]	4.9	0.9494
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10011361 [exp]	5.3	0.9591
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Lus10020418 [exp]	6.3	0.9412
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	8.4	0.9485
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10038575 [exp]	8.5	0.9295
AT1G26761			Arabinanase/levansucrase/inver...		Lus10036775 [exp]	9.5	0.9241

Compare expression of checked genes

Lus10021663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.