Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74460 468 / 8e-166 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 268 / 2e-87 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 203 / 5e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 200 / 6e-61 GLIP7 GDSL-motif lipase 7 (.1) AT1G71691 200 / 9e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G23540 198 / 5e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71250 197 / 7e-60 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 195 / 5e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 195 / 6e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001643 [exp] 614 / 0 AT1G74460 530 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 549 / 0 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 545 / 0 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 268 / 4e-87 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 258 / 4e-83 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10016918 [exp] 228 / 4e-71 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 225 / 2e-70 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 219 / 5e-68 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 209 / 5e-64 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068700 [exp] 505 / 3e-180 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 278 / 3e-91 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 263 / 3e-85 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.008G104600 [exp] 222 / 2e-69 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G036300 [exp] 207 / 8e-64 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G067600 [exp] 201 / 2e-61 AT1G71250 473 / 9e-168 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G102500 [exp] 201 / 3e-61 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 197 / 5e-60 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.011G089700 [exp] 195 / 5e-59 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G076600 [exp] 195 / 6e-59 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10021664 pacid=23180287 polypeptide=Lus10021664 locus=Lus10021664.g ID=Lus10021664.BGIv1.0 annot-version=v1.0 ATGAGCACAATCCTGCTACTCAACATCATCCTGGTTTCCCTGATCAGCATCCATGGGTGTCAATGCAAGACGGTTCAGTTCATATTCGGAGACTCCCTCT CAGACGTTGGTAACAACATCAAACTCCAAAAGAGTCTAGCTCAGGCTAGCTTGCCCTGGTACGGCATCGACTTCGGCAACGGCCTCCCTAATGGCCGCTT CACCAATGGCAGAACCGTCGCCGACATTATCGGTGACAACGCAGGGCTTCCCAGGCCTCCTGCTTTCCTCGACTCCTCATTGTCAGAGGATGTCATCCTT GACAAAGGTGTCAACTTTGCTTCCGGTGGCGGAGGGATCTTGAACGAAACTGGTGGCCTCTTTAACCAGAGGATTTCGCTGAGCAGGCAGATTGAGCTGT TCCAAGGGACACAAAAGCTGATATCTACCAAGATTGGGAAACAAGAAGCTGACAACTTCTTCGAGGATGCTAGGTACGTTGTTGCACTGGGGAGCAACGA CTTCATCAACAACTACTTGATGCCCATCTACAGGGATTCATGGACCTATAATGACCAGACCTTCGTCGATTACCTCATGGAAACTCTGGGTCTCCAACTC AAGTTGTTACATAGTTTGGGAGCGAGGCAAGTTATGGTGTTTGGATTAGGACCAATGGGTTGTATTCCACTACAGAGGGTGTTGAGCTCTTCAGGAGGTT GCCAAGAGAGAACCAACAAGCTGGCTCTAAGCTTTAACAAAGCTGCCGACAAGCTCGTCACCGGTTTGTCTAGTGACCTGGCTAACGCAACCTTCAGATT TGGGGATGCATATGATGTTGTCAATAATTTGATCTCTAATCCTCGCAAATACGGCTTCAGCAACTCGGACTCACCCTGCTGTGCGATGGGGAAGATAAGG CCGGCACTAACGTGCACGCCGGCTTCGAACTTGTGCAAGGATAGGAGCAAATACGTGTTCTGGGACGAATACCATCCATCAGACAGTGCAAACCAGTTGA TAGCCAAGGAGCTGATTAAGAAGTTTGGGTTCCTCAATTCATCTCCCCCGCCTTCCTCTGCACCACTTTCTGCTCCTTCCCCTCACAGCCTCGCTCCTAG TCAATTTGACACCCGCAAGTAG
AA sequence Show only first row Show all	>Lus10021664 pacid=23180287 polypeptide=Lus10021664 locus=Lus10021664.g ID=Lus10021664.BGIv1.0 annot-version=v1.0 MSTILLLNIILVSLISIHGCQCKTVQFIFGDSLSDVGNNIKLQKSLAQASLPWYGIDFGNGLPNGRFTNGRTVADIIGDNAGLPRPPAFLDSSLSEDVIL DKGVNFASGGGGILNETGGLFNQRISLSRQIELFQGTQKLISTKIGKQEADNFFEDARYVVALGSNDFINNYLMPIYRDSWTYNDQTFVDYLMETLGLQL KLLHSLGARQVMVFGLGPMGCIPLQRVLSSSGGCQERTNKLALSFNKAADKLVTGLSSDLANATFRFGDAYDVVNNLISNPRKYGFSNSDSPCCAMGKIR PALTCTPASNLCKDRSKYVFWDEYHPSDSANQLIAKELIKKFGFLNSSPPPSSAPLSAPSPHSLAPSQFDTRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10021664 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10018748 [exp]	2.8	0.8216
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Lus10001643 [exp]	5.1	0.8459
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	6.7	0.8853
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10017278 [exp]	11.0	0.7238
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10020767 [exp]	12.4	0.8422
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	12.5	0.8143
					Lus10041324 [exp]	13.0	0.7464
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	13.9	0.8385
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10001093 [exp]	15.3	0.8364
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	15.4	0.8123

Compare expression of checked genes

Lus10021664 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.