Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74470 757 / 0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001642 [exp] 887 / 0 AT1G74470 782 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10008405 [exp] 515 / 0 AT1G74470 536 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Lus10026772 [exp] 124 / 5e-34 AT1G74470 126 / 2e-35 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068801 [exp] 785 / 0 AT1G74470 774 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.009G157700 [exp] 496 / 8e-174 AT1G74470 517 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1) Potri.004G195800 [exp] 493 / 1e-172 AT1G74470 521 / 0.0 Pyridine nucleotide-disulphide oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10021665 pacid=23180318 polypeptide=Lus10021665 locus=Lus10021665.g ID=Lus10021665.BGIv1.0 annot-version=v1.0 ATGACTTCCTCCATCGCATTCAACTCCCTCACCGGCCTCCGCCACTCCTCCGCCGTCGACCAATCCCAACAATCACCTTCCAAACTCTCCCTCCCCCGCC GCGCCACCCTCCAAATCACCAATGCGCTCTCCAGCCCCAAGCTCCCTAACCGCCCCCTTCGCGTTGCCGTCATCGGAGGCGGCCCGGCAGGTGGCGCCGC TGCCGAAACACTCGCCAAGGGCGGGGTAGAAACCTACCTAATCGAGCGGAAGATGGACAACTGCAAGCCCTGCGGTGGCGCAATTCCGCTCTGTATGGTT GGGGAATTTGACCTGCCGATCGACATCATCGACCGCAAGGTCACCAAGATGAAGATGATTTCCCCGTCCAACGTCGCCGTCGACATTGGACGCACTCTGA AGCCCCACGAGTACATCGGGATGGTGAGGCGAGAAGTCCTCGATGCTTACCTCAGAGAGCGAGCGGAAAAGAACGGAGCTAATGTGATCAACGGGCTGTT CTTGAAAATGGATCTGCCAGAGAAAGGGAGTAAAACTGCTGGGGGAGTCGATGCGCCGTACGTTCTTCATTATACTGAGTACGACGGCACCAAAGGCGCC ACTGGACAGAAGAGAACCTTGGAGGTTGATGCCGTGATCGGAGCCGACGGCGCTAATTCCAGAGTCGCCAAGTCCATCGGCGCCGGTGACTACGATTACG CCATTGCTTTCCAGGAGAGGATCAAGATCCCCGATGAAAAGATGGTGTACTACGAAAACCTAGCTGAAATGTACGTGGGAGACGACGTCTCCCCCGACTT CTACGGATGGGTGTTCCCCAAATGCGACCACGTGGCAGTAGGAACGGGTACCGTGACGCACAAGGGAGACATCAAGAAGTTCCAGCTCGCCACAAGGAAC AGAGCCAAGGACAAGATCCTCGGAGGGAAAATCATCCGCGTGGAGGCCCACCCGATTCCGGAGCACCCGAGGCCACGGAGGGTGCTGGACAGGGTGGCAT TGGTGGGCGATGCGGCTGGGTACGTGACAAAGTGCTCGGGAGAAGGCATCTACTTTGCGGCGAAGAGCGGGAGGATGTGCGCTGAGGCGATTGTGGAAGG GTCGAAAGAAGGGAAAACGATGGTGGACGAGAGTGACCTGAGGAAGTACTTGGAGAAGTGGGACAAGACGTATTGGCCGACGTACAAGGTGCTGGACGTG CTGCAGAAGGTGTTCTACAGGTCGAATCCGGCGAGGGAGGCGTTTGTGGAGATGTGCGCGGATGAGTACGTGCAGAAGATGACGTTTGATAGCTACTTGT ACAAGAAGGTTGTACCGGGGAACCCGCTGGAGGATTTGAAGCTGGCGGTGAATACTATTGGGAGCTTGGTGAGGGCTAATGCTTTGAGGAGGGAGATGGA TAAGCTTAACGTATGA
AA sequence Show only first row Show all	>Lus10021665 pacid=23180318 polypeptide=Lus10021665 locus=Lus10021665.g ID=Lus10021665.BGIv1.0 annot-version=v1.0 MTSSIAFNSLTGLRHSSAVDQSQQSPSKLSLPRRATLQITNALSSPKLPNRPLRVAVIGGGPAGGAAAETLAKGGVETYLIERKMDNCKPCGGAIPLCMV GEFDLPIDIIDRKVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRERAEKNGANVINGLFLKMDLPEKGSKTAGGVDAPYVLHYTEYDGTKGA TGQKRTLEVDAVIGADGANSRVAKSIGAGDYDYAIAFQERIKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRN RAKDKILGGKIIRVEAHPIPEHPRPRRVLDRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSKEGKTMVDESDLRKYLEKWDKTYWPTYKVLDV LQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKLNV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	0	1
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	1.0	0.9662
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	2.8	0.9303
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	3.9	0.9348
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	4.9	0.9359
AT1G18060			unknown protein		Lus10041995 [exp]	6.7	0.9129
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	8.1	0.9192
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	8.7	0.9293
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	8.9	0.9119
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031744 [exp]	10.7	0.9264
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	10.8	0.9229

Compare expression of checked genes

Lus10021665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.