Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47520 543 / 0 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT1G53240 399 / 1e-138 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 395 / 4e-137 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT2G22780 395 / 1e-136 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 375 / 4e-129 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G53910 84 / 7e-20 malate dehydrogenase-related (.1) AT4G17260 51 / 6e-07 Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000275 [exp] 755 / 0 AT3G47520 543 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10034458 [exp] 645 / 0 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 632 / 0 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10017939 [exp] 405 / 7e-141 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10038323 [exp] 395 / 1e-136 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10039642 [exp] 386 / 3e-133 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10012459 [exp] 363 / 4e-124 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 366 / 7e-123 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10013680 [exp] 357 / 3e-122 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G102000 [exp] 615 / 0 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 613 / 0 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 601 / 0 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.011G096300 [exp] 413 / 5e-144 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 406 / 3e-141 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 400 / 6e-139 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.007G009100 [exp] 399 / 3e-138 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.009G081600 [exp] 388 / 6e-134 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 383 / 7e-132 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G152000 [exp] 243 / 2e-78 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021666 pacid=23180266 polypeptide=Lus10021666 locus=Lus10021666.g ID=Lus10021666.BGIv1.0 annot-version=v1.0 ATGGCAGCAACATCAGCTACCACCTTCTCTATCGGATCAACTATTTCCCTTGGCCCTAAAGCCAGCCAAATTCGACAGCGACTACCATTAGCTTTGGGAT TCAATTCTCATTATTCACTGGATCTGAAGACAACTAGCTTCGCCTTGCAGTCTTCTTTTCTGGACAAGAATAGCTATACTGCTTTGCAGAGCTCCTCTCT ACAAAAGCGCAGAGCCGTAAATGGAAGGTTGCAATCTCGCCTTATTGCACAGGCATCTTACAAAGTGGCTGTTCTTGGAGCAGCTGGAGGGATAGGTCAG CCTCTTTCACTGCTGGTAAAGATGTCTCCATTGGTTTCTACCCTCAACCTGTACGATATAGCAAACGTAAAGGGTGTTGCTGCTGACCTCAGCCATTGCA ACACGCCGGCACAAGTTTTCGACTTCACCGGTGCCTCTGAGTTGGGCGATTGCTTGAAAGGTGTGGATGTTGTTGTCATTCCTGCCGGAGTTCCAAGAAA GCCCGGCATGACCCGTGATGATCTCTTTAATATCAATGCCAGCATTGTAAAGACCTTGATTGAGGCTGTTGCTGACAACTGCCCCGGTGCTTTCATTCAC ATCATCAGCAACCCAGTCAACTCCACAGTGCCGATTGCTGCTGAAGTCTTGAAGCAGAAGGGTGTTTATGATCCAAAGAAGCTCTTTGGCGTCACTACTC TTGATGTTGTGAGGGCAAATACATTCGTTGCTCAGAAGAAGAACCTCAGAGTGATTGATGTCGATGTCCCGGTTATCGGAGGCCACGCCGGGATTACCAT CCTTCCTCTTCTGTCACAGGCCACTCCCACGCTTAATTTCACCGACGAGGAGATCCACGAGCTAACTGTAAAGATTCAGAATGCTGGAACAGAAGTTGTC GAGGCAAAGGCAGGTGCTGGCTCCGCTACCCTGTCGATGGCTTATGCAGCAGCCAGATTTGTCGAATCTTCTCTTCGTGCGCTCGCCGGAGATGCTGATG TGTACGAGTGTGCGTATGTGCAATCTGATATTACTGGCAATCCATTCTTCGCATCGAGGATTAAGCTCGGAAAGAAGGGTGTCGAGTCTCTCATTGAATC GACACTTGTTGGTATGAGCACATATGAACAGAAGGCACTCGATGCTCTGGCCCCTGAACTAACGGCAAGCATCGAGAAAGGCATCAACTTCGCTTGTAAG CAGCCAGTGGCTGCATAG
AA sequence Show only first row Show all	>Lus10021666 pacid=23180266 polypeptide=Lus10021666 locus=Lus10021666.g ID=Lus10021666.BGIv1.0 annot-version=v1.0 MAATSATTFSIGSTISLGPKASQIRQRLPLALGFNSHYSLDLKTTSFALQSSFLDKNSYTALQSSSLQKRRAVNGRLQSRLIAQASYKVAVLGAAGGIGQ PLSLLVKMSPLVSTLNLYDIANVKGVAADLSHCNTPAQVFDFTGASELGDCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLIEAVADNCPGAFIH IISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRVIDVDVPVIGGHAGITILPLLSQATPTLNFTDEEIHELTVKIQNAGTEVV EAKAGAGSATLSMAYAAARFVESSLRALAGDADVYECAYVQSDITGNPFFASRIKLGKKGVESLIESTLVGMSTYEQKALDALAPELTASIEKGINFACK QPVAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10021666 [exp]	0	1
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Lus10024163 [exp]	1.0	0.8066
AT5G12860		DIT1	dicarboxylate transporter 1 (....		Lus10002560 [exp]	10.3	0.7753
AT1G71090			Auxin efflux carrier family pr...		Lus10002280 [exp]	11.0	0.6816
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Lus10016757 [exp]	23.8	0.7632
AT5G19760			Mitochondrial substrate carrie...		Lus10030361 [exp]	32.7	0.7411
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028706 [exp]	36.6	0.7352
AT5G38640			NagB/RpiA/CoA transferase-like...		Lus10038944 [exp]	36.9	0.7388
AT3G18420			Protein prenylyltransferase su...		Lus10031923 [exp]	40.8	0.7410
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	46.2	0.7336
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Lus10019360 [exp]	51.1	0.7269

Compare expression of checked genes

Lus10021666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.