Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47530 140 / 4e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G13270 128 / 1e-34 RARE1 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G47580 117 / 5e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 120 / 6e-32 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G25360 119 / 2e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33170 118 / 3e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 118 / 3e-31 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22690 116 / 1e-30 unknown protein AT1G04840 114 / 5e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31920 114 / 1e-29 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000274 [exp] 187 / 1e-58 AT3G47530 554 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003325 [exp] 158 / 1e-46 AT2G41080 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024222 [exp] 155 / 8e-45 AT1G74630 719 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028106 [exp] 135 / 5e-37 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028413 [exp] 128 / 1e-34 AT2G25580 447 / 8e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041867 [exp] 127 / 2e-34 AT2G25580 447 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 116 / 2e-30 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038400 [exp] 116 / 2e-30 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017583 [exp] 115 / 3e-30 AT5G66520 481 / 2e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G074500 [exp] 153 / 7e-44 AT3G47530 750 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G038900 [exp] 142 / 9e-41 AT2G15690 280 / 1e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 133 / 2e-36 AT3G22690 570 / 0.0 unknown protein Potri.016G077700 [exp] 121 / 2e-32 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G252400 [exp] 120 / 3e-32 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G044700 [exp] 120 / 7e-32 AT3G22690 582 / 0.0 unknown protein Potri.003G058300 [exp] 119 / 1e-31 AT2G15690 499 / 2e-170 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G116600 [exp] 117 / 9e-31 AT2G25580 452 / 3e-151 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 117 / 9e-31 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G075800 [exp] 117 / 1e-30 AT3G57430 1189 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021667 pacid=23180338 polypeptide=Lus10021667 locus=Lus10021667.g ID=Lus10021667.BGIv1.0 annot-version=v1.0 ATGAGTAGTAGAGAGTTTGGGATTCAACCAAACATTCATCACTATAGATGCATGGTCGATCTGATGGGCCGCGTGGGGAAGCTCGACCAAGCATACAAGC TGATAATGTCGATGAAACTGGTGAAGCCGGATTCAGCAATATGGAGGACTCTACTTGCAGCTTGTAGAATCCATCGCCATGTCACGCTGGGAGAACGAGT GGTGGAGCATTTGGTTGAGCTCAAGGCTCAGGAAGCCGGGGACTATATGCTATTGTTGAACATGTATTCTTCAGTTGGGGAAGAAAAGGGTCATGTGCTT TCTTATCACAGCGAAAAGTTAGCAATGGCATTTGGGATTCTTGAAACTCCACCTGGAACGACGATAAGGATAGCTAAGAACCTGAGGACCTGTGTTGACT GCCACAACTTTGCAAAGTCTGTTTCCTGGGTGTACAATAGAGAGGTAGTCATAAGAGATCGAAACCGATTTCATCATTTTCGCGAAGGACATTGCTCCTG CAACGACTTCTGGTAG
AA sequence Show only first row Show all	>Lus10021667 pacid=23180338 polypeptide=Lus10021667 locus=Lus10021667.g ID=Lus10021667.BGIv1.0 annot-version=v1.0 MSSREFGIQPNIHHYRCMVDLMGRVGKLDQAYKLIMSMKLVKPDSAIWRTLLAACRIHRHVTLGERVVEHLVELKAQEAGDYMLLLNMYSSVGEEKGHVL SYHSEKLAMAFGILETPPGTTIRIAKNLRTCVDCHNFAKSVSWVYNREVVIRDRNRFHHFREGHCSCNDFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02980		OTP85	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10021667 [exp]	0	1
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	1.7	0.9122
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10043428 [exp]	3.5	0.8698
AT2G46080			unknown protein		Lus10036385 [exp]	3.5	0.9025
AT1G13570			F-box/RNI-like superfamily pro...		Lus10016297 [exp]	3.9	0.8873
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10019016 [exp]	4.0	0.8680
AT5G11680			unknown protein		Lus10027000 [exp]	7.3	0.8951
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10027334 [exp]	8.4	0.8835
AT5G51410			LUC7 N_terminus domain-contain...		Lus10031732 [exp]	10.7	0.8861
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	13.9	0.8815
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10035868 [exp]	16.4	0.8277

Compare expression of checked genes

Lus10021667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.