Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023787 [exp] 179 / 3e-54 ND 44 / 3e-04 Lus10006887 [exp] 167 / 8e-48 AT4G19130 63 / 7e-10 Replication factor-A protein 1-related (.1) Lus10027612 [exp] 141 / 1e-38 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10042979 [exp] 136 / 5e-37 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10001889 [exp] 122 / 2e-35 AT1G52950 42 / 6e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10025008 [exp] 127 / 4e-34 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10034056 [exp] 115 / 1e-29 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10008725 [exp] 102 / 2e-27 ND 38 / 0.003 Lus10010590 [exp] 103 / 2e-25 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021668 pacid=23180322 polypeptide=Lus10021668 locus=Lus10021668.g ID=Lus10021668.BGIv1.0 annot-version=v1.0 ATGTCGCCTGCTGTCAATTTTGCCGTGCCATCCGCAGAGTCCTCCCTTCTACACCGCCTTCTACTTCTCTCATTCAAATTCCCACCTCTCTTACAGCAAC TCTTTACTAAAACTACAGATCTGTGCAAAGGCATACTTTTCCACGACCTGTTGCCGGAGAACCCTCCGTCCGAGCTCCATCTGTGCCTCCGCCATATATG GAAGCTGGGAAACCCTTCGACCCCGGATACGTTTTTGGCTCTGGGAACCATCTGGACTGACGTTGAGGTACGACCTGTCCCTTGCCATCTGTTTTCCTCT CTGTTTGGTTGGTTTCATCAGCTTTCCTGTTCCTCCTGTGTTCGCATCCAAGGCGATGCTCTCCGGAATTTCGCCGGCGTGCTGCAGAAGCGGATTTCTC CCGGCTGCGTTTATAAGATCTCAAATTACTCCCTCCGCAAACCCCGCGATAATTACCGCAGCTACCGTTACCTTCATTGGATTGCTCTAACTGCGGCTAC TCAGTTAGAGCTTCAAACTGATCCGGAACCACCGTTCGCGGCGGAAGTCCTCGAATACCTCTCGCTGATTAAGTTCCCCTCCCGAATGAAATCGTGTGCT TACCTGAGTGTAACATCCCAGTCGCTAACTTAA
AA sequence Show only first row Show all	>Lus10021668 pacid=23180322 polypeptide=Lus10021668 locus=Lus10021668.g ID=Lus10021668.BGIv1.0 annot-version=v1.0 MSPAVNFAVPSAESSLLHRLLLLSFKFPPLLQQLFTKTTDLCKGILFHDLLPENPPSELHLCLRHIWKLGNPSTPDTFLALGTIWTDVEVRPVPCHLFSS LFGWFHQLSCSSCVRIQGDALRNFAGVLQKRISPGCVYKISNYSLRKPRDNYRSYRYLHWIALTAATQLELQTDPEPPFAAEVLEYLSLIKFPSRMKSCA YLSVTSQSLT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021668 [exp]	0	1
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	4.5	0.8805
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	8.3	0.8562
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10027354 [exp]	15.2	0.8313
					Lus10007750 [exp]	18.5	0.8509
					Lus10040954 [exp]	20.1	0.8676
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10033076 [exp]	23.1	0.8517
					Lus10023010 [exp]	23.7	0.8440
					Lus10019560 [exp]	25.2	0.7850
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	27.7	0.8528
AT4G04350		EMB2369	EMBRYO DEFECTIVE 2369, tRNA sy...		Lus10020034 [exp]	30.2	0.8329

Compare expression of checked genes

Lus10021668 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.