Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) AT1G45230 53 / 1e-08 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT2G40030 46 / 7e-06 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) AT3G46630 44 / 1e-05 Protein of unknown function (DUF3223) (.1) AT1G63020 44 / 3e-05 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035009 [exp] 332 / 2e-117 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1) Lus10024794 [exp] 98 / 6e-24 AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10009570 [exp] 96 / 3e-23 AT5G62440 88 / 7e-20 Protein of unknown function (DUF3223) (.1) Lus10024824 [exp] 94 / 1e-22 AT5G62440 84 / 8e-19 Protein of unknown function (DUF3223) (.1) Lus10024968 [exp] 92 / 8e-22 AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) Lus10002053 [exp] 91 / 3e-21 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10011903 [exp] 86 / 2e-19 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10023594 [exp] 83 / 5e-19 AT5G62440 96 / 1e-23 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 81 / 7e-18 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 190 / 6e-61 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 168 / 5e-53 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 154 / 3e-48 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.001G111300 [exp] 55 / 5e-09 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.014G023400 [exp] 49 / 2e-07 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.014G028300 [exp] 48 / 8e-07 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.001G027232 [exp] 47 / 3e-06 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.002G125700 [exp] 45 / 6e-06 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023200 [exp] 44 / 1e-05 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1) Potri.003G196900 [exp] 43 / 5e-05 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10021669 pacid=23180357 polypeptide=Lus10021669 locus=Lus10021669.g ID=Lus10021669.BGIv1.0 annot-version=v1.0 ATGGAGCTCGTCGACACCTCTGAAGCAGGGAAGCGAGCCAGGGAGGAGCCGGAAGCAACGAATGGCGACGCCTCGAAGAAGCAGAAGGTGGATGAGAAGT CTGCGGAAGAGCAGCGACTGGAGGAAGCTGGAGACAAATCTGCTGAGGAGGTCAAGGAGGTCTGTTTGGGACCGAAGAAATTCGGGACTGCCGTTGAGAT GTTCGATTACTTCTTCAAGTTCCTCCACGTTTGGCCGCCTAATCTGGATCTCAACAAGTACGAGCACATGGTGTTCCTTGATTTGCTGAAGAAGGGTCAT CAAGAGTCGGAGAAAAAGATTGGTACTGGGGTGAGATCGTTCCAAATCCGAAATCACCCAATGTGGAAGAGCAGGTGCTTCTTCATCATAAGGGAAGACG ATTCGGTGGAGGATTTCAGCTTCAGGAAGTGTGTTGACCACATCCTTCCCTTGCCAGAGGATATGAAAGGACAAAGTGGTTCCAATGGTGGTGGTAGGGG CCATGGAGGCTTTGGTGGTAGAGGAAGAGGTGGACGAGGCCGAGGCCGTGGTGGCCGTGGAAAGAAGTGA
AA sequence Show only first row Show all	>Lus10021669 pacid=23180357 polypeptide=Lus10021669 locus=Lus10021669.g ID=Lus10021669.BGIv1.0 annot-version=v1.0 MELVDTSEAGKRAREEPEATNGDASKKQKVDEKSAEEQRLEEAGDKSAEEVKEVCLGPKKFGTAVEMFDYFFKFLHVWPPNLDLNKYEHMVFLDLLKKGH QESEKKIGTGVRSFQIRNHPMWKSRCFFIIREDDSVEDFSFRKCVDHILPLPEDMKGQSGSNGGGRGHGGFGGRGRGGRGRGRGGRGKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10021669 [exp]	0	1
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Lus10043158 [exp]	1.4	0.8811
AT5G27120			NOP56-like pre RNA processing ...		Lus10018995 [exp]	1.7	0.8669
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	4.2	0.8679
AT3G58660			Ribosomal protein L1p/L10e fam...		Lus10024134 [exp]	6.3	0.8082
AT1G30880			unknown protein		Lus10001224 [exp]	7.7	0.8401
AT1G73770			unknown protein		Lus10013498 [exp]	7.9	0.7622
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10026479 [exp]	8.1	0.8595
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10016970 [exp]	8.9	0.8647
AT4G15000			Ribosomal L27e protein family ...		Lus10010461 [exp]	14.1	0.8210
AT5G59240			Ribosomal protein S8e family p...		Lus10025887 [exp]	16.3	0.8355

Compare expression of checked genes

Lus10021669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.