Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30490 688 / 0 REF3, CYP73A5, ATC4H REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) AT2G40890 204 / 2e-60 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G22690 195 / 2e-56 CYP706A1 "cytochrome P450, family 706, subfamily A, polypeptide 1", cytochrome P450, family 706, subfamily A, polypeptide 1 (.1) AT4G22710 194 / 2e-56 CYP706A2 "cytochrome P450, family 706, subfamily A, polypeptide 2", cytochrome P450, family 706, subfamily A, polypeptide 2 (.1) AT3G26280 167 / 2e-46 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT3G48290 165 / 7e-46 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT1G74550 164 / 1e-45 CYP98A9 cytochrome P450, family 98, subfamily A, polypeptide 9 (.1) AT3G48280 163 / 3e-45 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT5G07990 163 / 7e-45 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G13310 159 / 9e-44 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035011 [exp] 776 / 0 AT2G30490 867 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10034449 [exp] 724 / 0 AT2G30490 882 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10027598 [exp] 533 / 0 AT2G30490 630 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10019110 [exp] 510 / 0 AT2G30490 555 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Lus10033524 [exp] 189 / 1e-54 AT2G40890 866 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10020847 [exp] 189 / 2e-54 AT2G40890 859 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Lus10019457 [exp] 178 / 2e-50 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 176 / 1e-49 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10029930 [exp] 164 / 3e-45 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G130700 [exp] 715 / 0 AT2G30490 812 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.013G157900 [exp] 707 / 0 AT2G30490 826 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.018G146100 [exp] 546 / 0 AT2G30490 622 / 0.0 REDUCED EPRDERMAL FLUORESCENCE 3, CINNAMATE 4-HYDROXYLASE, cinnamate-4-hydroxylase (.1) Potri.006G033300 [exp] 192 / 1e-55 AT2G40890 897 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031000 [exp] 189 / 1e-54 AT2G40890 776 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.016G031100 [exp] 187 / 5e-54 AT2G40890 796 / 0.0 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) Potri.006G058200 [exp] 168 / 1e-46 AT5G06900 584 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Potri.015G086000 [exp] 165 / 1e-45 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.007G082900 [exp] 164 / 3e-45 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G083500 [exp] 163 / 4e-45 AT3G26300 377 / 2e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021671 pacid=23180279 polypeptide=Lus10021671 locus=Lus10021671.g ID=Lus10021671.BGIv1.0 annot-version=v1.0 ATGGGCCAGCGCAACCTCGTCGTCGTGTCCTCCCCTGACCTCGCCAAGGAGGTCCTCCACACTCAGGGCGTCGAGTTCGGCTCCCGTACTCGCAACGTCG TCTTCGACATCTTCACCGGCAAGGGACAGGATATGGTGTTCACCGTATACGGCGAGCACTGGAGGAAGATGCGCCGGATCATGACCGTCCCGTTCTTCAC CAACAAGGTCGTCCAGCAGAATCGCCAGGGGTGGGAGGCAGAGGCCGCCGCAGTGGTGGAGGACGTCAAGAAGGATCCGGAAGCCGCAGCTGGCGGAATC GTGCTCCGCCGCAGGCTCCAGCTGATGATGTACAACAACATTTTCCGCATCATGTTCGACCGACGGTTCGATTCGATGGAGGATCCGTTGTTTAATAAGC TCAAGGCATTGAACGGGGAGCGGAGTCGGTTGGCTCAGAGCTTCGAATACAACTATGGAGATTTCATCCCGATTTTGAGGCCGTTCTTGAGAGGCTATTT GAAGGTGTGCAAGGATGTCAAGGATAGGAGGCTGCAGCTATTCAAGGACTACTTCATTGCAGATAGGAAGAAAGCGGTGAGCACGAAGGGGGAGATGAGT TGTGCGATGGATCATATCATGGATGCGCAGCAGAAGGGAGAAATCAACGAAGAAAACGTCCTCTACATCGTCGAGAACATCAACGTCGCCGCCATTGAGA CCACGTTGTGGTCAATCGAATGGGGGATTGCAGAGCTAGTCAACCATCCAGAGATCCAGCAAAAGCTAAGGGAAGAACTGGACACGGTTTTGGGACCGGG TAACCAGGTGACCGAGCCCGACGTCCAGAAGCTACCGTACCTTCAGGCAGTGGTCAAGGAAACCCTCCGTCTAAGAATGGCAATCCCTCTGCTCGTCCCG CACATGAACCTCCACGACGCTAAGCTCCGTGGATTCGACATCCCCGCCGAGAGCAAGATATTGGTGAACGCGTGGTGGCTGGCGAACAACCCTGAGCAAT GGAAGAAACCTGAGGAGTTCAGGCCGGAAAGGTTCCTCGAGGAGGAGGCGAAGGTGGAGGCGAATGGAAACGACTTCAGGTACCTTCCGTTCGGAGTTGG GAGGAGGAGTTGCCCTGGAATCATCCTTGCCCTGCCCATTTTGGGGATTACCATCGGACGTTTGGTGCAGAACTTCGAGCTGTTGCCTCCTCCTGGACAG TCCAAGCTTGACACTTCTGAGAAAGGTGGACAGTTCAGCTTGCATATATTGAAGCATTCGACCATTGTTGCTAAGCCAAGGTCGGTTTAA
AA sequence Show only first row Show all	>Lus10021671 pacid=23180279 polypeptide=Lus10021671 locus=Lus10021671.g ID=Lus10021671.BGIv1.0 annot-version=v1.0 MGQRNLVVVSSPDLAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNRQGWEAEAAAVVEDVKKDPEAAAGGI VLRRRLQLMMYNNIFRIMFDRRFDSMEDPLFNKLKALNGERSRLAQSFEYNYGDFIPILRPFLRGYLKVCKDVKDRRLQLFKDYFIADRKKAVSTKGEMS CAMDHIMDAQQKGEINEENVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQQKLREELDTVLGPGNQVTEPDVQKLPYLQAVVKETLRLRMAIPLLVP HMNLHDAKLRGFDIPAESKILVNAWWLANNPEQWKKPEEFRPERFLEEEAKVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQ SKLDTSEKGGQFSLHILKHSTIVAKPRSV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	0	1
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	1.7	0.9420
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10022794 [exp]	4.0	0.9223
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	4.2	0.8995
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	4.2	0.8953
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	4.4	0.8540
AT3G10960		ATAZG1	AZA-guanine resistant1 (.1)		Lus10012895 [exp]	5.7	0.8579
AT5G13420			Aldolase-type TIM barrel famil...		Lus10043136 [exp]	6.6	0.8982
AT2G45290			Transketolase (.1)		Lus10030283 [exp]	8.9	0.8958
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10018477 [exp]	9.2	0.8687
AT2G45290			Transketolase (.1)		Lus10000789 [exp]	9.8	0.8900

Compare expression of checked genes

Lus10021671 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.